Wall clock time and date at job start Sun Mar 29 2020 21:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48504 * 109.46853 * 239.99965 * 3 2 1 5 5 H 1.48500 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46799 * 120.00141 * 3 2 1 7 7 C 1.37877 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00422 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47136 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99432 * 359.97438 * 10 9 7 12 12 N 1.34769 * 120.00395 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00360 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.55059 * 9.27175 * 13 12 10 15 15 C 1.53006 * 117.49756 * 223.60837 * 13 12 10 16 16 C 1.52997 * 117.50365 * 154.98596 * 13 12 10 17 17 H 1.09002 * 117.49884 * 214.98231 * 16 13 12 18 18 C 1.53006 * 117.49537 * 359.97438 * 16 13 12 19 19 C 1.53001 * 117.49881 * 248.63480 * 18 16 13 20 20 C 1.52996 * 60.00003 * 252.51464 * 19 18 16 21 21 H 0.97000 * 119.99792 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47228 * 60.00104 * 9 7 2 23 23 H 1.09000 * 109.47194 * 300.00093 * 9 7 2 24 24 H 0.97009 * 119.99984 * 359.97438 * 12 10 9 25 25 H 1.08990 * 117.50086 * 359.97438 * 15 13 12 26 26 H 1.09004 * 117.49623 * 145.02212 * 15 13 12 27 27 H 1.09004 * 115.54889 * 34.34803 * 18 16 13 28 28 H 1.08997 * 117.49770 * 0.02562 * 19 18 16 29 29 H 1.09002 * 117.49400 * 145.02040 * 19 18 16 30 30 H 1.09007 * 117.49656 * 252.51304 * 20 19 18 31 31 H 1.08995 * 117.50163 * 107.49372 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9153 -0.0011 13 6 2.7331 -6.0288 -0.0005 14 1 3.7762 -5.7555 0.1588 15 6 2.4459 -7.2042 -0.9370 16 6 2.2570 -7.3650 0.5728 17 1 2.9869 -7.9710 1.1097 18 6 0.8232 -7.4359 1.1022 19 6 0.6347 -7.5966 2.6120 20 6 0.3472 -8.7720 1.6758 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6247 -2.5570 0.8897 24 1 0.8274 -5.0926 -0.0011 25 1 1.5485 -7.1492 -1.5531 26 1 3.3001 -7.7044 -1.3933 27 1 0.0933 -6.8301 0.5651 28 1 1.5322 -7.6514 3.2282 29 1 -0.2193 -7.0963 3.0686 30 1 -0.6960 -9.0451 1.5165 31 1 1.0554 -9.6005 1.6760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143206930.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:48 Heat of formation + Delta-G solvation = -19.932294 kcal Electronic energy + Delta-G solvation = -13226.782886 eV Core-core repulsion = 10894.509926 eV Total energy + Delta-G solvation = -2332.272960 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.73969 -39.10071 -36.48760 -35.10213 -33.58818 -30.80333 -25.97428 -24.77018 -23.29569 -22.73995 -21.81832 -20.43679 -18.53976 -17.90729 -17.21638 -16.56123 -16.07644 -15.94474 -15.28730 -14.69701 -14.51874 -14.15906 -13.39005 -13.14982 -12.80601 -12.68502 -12.51197 -12.32891 -12.16562 -12.07024 -12.02305 -11.48098 -11.20756 -10.63409 -10.62417 -10.40535 -9.54853 -8.25813 -6.33443 1.40255 1.43391 1.52026 1.80377 2.27628 2.47655 2.64721 3.09427 3.31837 3.56732 3.86013 3.94303 4.23386 4.28383 4.32030 4.35331 4.47332 4.83691 4.87300 4.96525 5.06139 5.07905 5.20119 5.23990 5.30387 5.34653 5.63000 5.75464 6.04531 6.68472 6.82466 7.32662 7.49941 8.86259 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051745 B = 0.006263 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.982804 B = 4469.517772 C = 4766.188174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.009 3.991 10 C 0.521 3.479 11 O -0.585 6.585 12 N -0.695 5.695 13 C 0.054 3.946 14 H 0.112 0.888 15 C -0.170 4.170 16 C -0.112 4.112 17 H 0.123 0.877 18 C -0.142 4.142 19 C -0.184 4.184 20 C -0.157 4.157 21 H 0.268 0.732 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.408 0.592 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -16.911 1.629 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.073 0.927 9 C -0.031 4.031 10 C 0.310 3.690 11 O -0.465 6.465 12 N -0.347 5.347 13 C -0.052 4.052 14 H 0.130 0.870 15 C -0.209 4.209 16 C -0.131 4.131 17 H 0.141 0.859 18 C -0.160 4.160 19 C -0.221 4.221 20 C -0.194 4.194 21 H 0.077 0.923 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.245 0.755 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.035 -16.621 1.631 16.701 hybrid contribution -0.139 0.952 -0.003 0.962 sum -0.174 -15.669 1.627 15.754 Atomic orbital electron populations 1.70027 1.07163 1.28209 1.51060 1.25807 0.95873 1.02793 0.94385 0.85488 0.78349 0.78190 0.78929 1.19722 1.19773 1.19741 1.21342 0.93699 0.91257 1.51414 0.92669 1.19072 0.94261 0.90914 0.98815 1.21474 0.89893 0.84505 0.73078 1.90494 1.19233 1.85425 1.51359 1.45386 1.09918 1.04197 1.75158 1.21688 0.94395 0.82373 1.06722 0.86985 1.23563 1.04498 1.00141 0.92652 1.22286 0.96543 0.97956 0.96314 0.85936 1.21643 0.95295 1.02330 0.96727 1.22993 1.03547 1.03293 0.92267 1.23003 1.02791 0.91278 1.02289 0.92337 0.93976 0.94023 0.75501 0.87967 0.86441 0.88281 0.88821 0.88665 0.87722 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.72 13.29 21.45 0.28 -54.44 16 2 C 0.01 0.58 5.46 84.65 0.46 1.05 16 3 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.54 -32.42 8.92 25.60 0.23 -32.19 16 8 H 0.06 3.48 6.75 -2.91 -0.02 3.46 16 9 C 0.01 0.47 5.46 29.10 0.16 0.63 16 10 C 0.52 24.76 7.82 87.66 0.69 25.45 16 11 O -0.59 -32.02 15.03 -3.03 -0.05 -32.07 16 12 N -0.70 -24.63 5.34 -442.54 -2.36 -26.99 16 13 C 0.05 1.62 6.41 44.99 0.29 1.91 16 14 H 0.11 3.83 7.40 -2.39 -0.02 3.81 16 15 C -0.17 -3.68 10.18 30.60 0.31 -3.37 16 16 C -0.11 -2.40 5.85 -10.79 -0.06 -2.47 16 17 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.14 -2.86 5.34 -10.79 -0.06 -2.92 16 19 C -0.18 -3.53 10.25 30.59 0.31 -3.22 16 20 C -0.16 -2.46 10.25 30.59 0.31 -2.15 16 21 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 22 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.41 12.36 7.15 -92.70 -0.66 11.70 16 25 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.10 2.07 6.87 -2.38 -0.02 2.06 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -69.05 270.21 3.00 -66.05 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.46 Total: 16.90 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 2.64 Total: -17.29 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.08 Total: -81.43 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.05 Total: -32.07 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.05 3.00 -66.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206930.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.114 kcal (2) G-P(sol) polarization free energy of solvation -69.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds