Wall clock time and date at job start Sun Mar 29 2020 21:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47123 * 2 1 4 4 C 1.35670 * 116.99874 * 179.97438 * 3 2 1 5 5 C 1.39052 * 120.01132 * 180.02562 * 4 3 2 6 6 N 1.32104 * 120.10823 * 179.97438 * 5 4 3 7 7 C 1.32034 * 120.15569 * 359.97438 * 6 5 4 8 8 C 1.39231 * 120.02958 * 0.02562 * 7 6 5 9 9 N 1.38816 * 120.05371 * 180.02562 * 8 7 6 10 10 C 1.36892 * 119.99923 * 359.97438 * 9 8 7 11 11 H 1.07997 * 120.00097 * 0.02562 * 10 9 8 12 12 C 1.38816 * 119.99923 * 180.02562 * 10 9 8 13 13 N 1.31565 * 120.00172 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00380 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46735 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47609 * 119.99795 * 14 12 10 17 17 H 1.48498 * 109.47123 * 240.00363 * 14 12 10 18 18 N 1.32513 * 120.01754 * 359.97438 * 4 3 2 19 19 H 1.08998 * 109.47053 * 299.99967 * 1 2 3 20 20 H 1.09004 * 109.46987 * 60.00151 * 1 2 3 21 21 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47053 * 240.00033 * 2 1 3 23 23 H 1.09004 * 109.46987 * 119.99849 * 2 1 3 24 24 H 1.07998 * 119.95143 * 359.97438 * 5 4 3 25 25 H 1.07999 * 119.98359 * 179.97438 * 7 6 5 26 26 H 0.96997 * 119.99705 * 179.97438 * 9 8 7 27 27 H 0.97001 * 120.00433 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5250 0.0005 5 6 3.8831 2.8099 0.0011 6 7 5.1925 2.9851 0.0021 7 6 6.0014 1.9416 0.0032 8 6 5.4755 0.6524 0.0026 9 7 6.3255 -0.4451 0.0042 10 6 7.6819 -0.2604 0.0058 11 1 8.0907 0.7392 0.0062 12 6 8.5319 -1.3579 0.0069 13 7 8.0339 -2.5756 0.0058 14 14 10.3828 -1.1059 0.0098 15 1 10.6843 0.3482 0.0099 16 1 10.9659 -1.7329 1.2229 17 1 10.9696 -1.7324 -1.2020 18 7 4.1589 0.4744 0.0016 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.2247 3.6659 0.0007 25 1 7.0714 2.0881 0.0036 26 1 5.9583 -1.3429 0.0042 27 1 8.6278 -3.3426 0.0069 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531138.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:55 Heat of formation + Delta-G solvation = -13.802730 kcal Electronic energy + Delta-G solvation = -13157.664574 eV Core-core repulsion = 10722.117068 eV Total energy + Delta-G solvation = -2435.547505 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.76178 -39.44130 -37.38697 -34.68111 -33.64086 -32.43576 -29.85108 -27.10221 -25.51891 -23.76422 -23.38423 -20.24402 -19.28451 -18.26017 -17.49789 -17.28380 -17.01051 -16.06719 -15.60638 -15.41105 -14.98856 -13.86330 -13.78272 -13.49130 -13.32407 -13.16327 -12.58745 -12.55540 -12.37762 -12.07096 -12.03924 -11.90116 -11.28475 -10.37098 -9.96299 -8.84645 -8.64055 -5.93867 0.39207 0.60241 1.44675 1.49473 1.59505 2.05674 2.20706 2.80078 2.83061 3.29001 3.80310 3.95134 4.06959 4.09348 4.19838 4.49338 4.72479 4.77546 4.92396 4.97552 5.20901 5.22846 5.45815 5.62221 6.25930 6.44927 6.71973 7.10794 7.20326 7.54624 8.53175 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.047333 B = 0.007657 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.416996 B = 3656.085028 C = 4227.055660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.059 3.941 3 O -0.307 6.307 4 C 0.329 3.671 5 C -0.110 4.110 6 N -0.379 5.379 7 C -0.084 4.084 8 C 0.333 3.667 9 N -0.525 5.525 10 C -0.326 4.326 11 H 0.120 0.880 12 C -0.015 4.015 13 N -0.914 5.914 14 Si 1.008 2.992 15 H -0.251 1.251 16 H -0.275 1.275 17 H -0.275 1.275 18 N -0.610 5.610 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.097 0.903 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.179 0.821 25 H 0.164 0.836 26 H 0.395 0.605 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 3.197 -0.001 7.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.017 4.017 3 O -0.213 6.213 4 C 0.141 3.859 5 C -0.272 4.272 6 N -0.092 5.092 7 C -0.256 4.256 8 C 0.087 3.913 9 N -0.130 5.130 10 C -0.456 4.456 11 H 0.138 0.862 12 C -0.217 4.217 13 N -0.550 5.550 14 Si 0.830 3.170 15 H -0.174 1.174 16 H -0.201 1.201 17 H -0.201 1.201 18 N -0.353 5.353 19 H 0.089 0.911 20 H 0.089 0.911 21 H 0.116 0.884 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.196 0.804 25 H 0.181 0.819 26 H 0.230 0.770 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.679 3.101 -0.001 7.364 hybrid contribution 0.656 -1.083 0.000 1.266 sum -6.023 2.019 -0.001 6.353 Atomic orbital electron populations 1.21801 0.90002 1.04229 1.03684 1.22752 0.96802 0.80625 1.01482 1.86214 1.16031 1.31417 1.87622 1.20711 0.84196 0.90864 0.90088 1.22243 0.91696 0.94491 1.18794 1.67991 1.03676 1.32785 1.04790 1.22605 1.00650 0.86995 1.15361 1.19057 0.86685 0.89184 0.96346 1.40922 1.04874 1.05107 1.62129 1.20261 0.79920 0.96186 1.49208 0.86249 1.26386 1.06059 0.93878 0.95423 1.69798 1.38783 0.99090 1.47328 0.84624 0.74708 0.79662 0.77998 1.17446 1.20069 1.20080 1.67309 1.03869 1.34023 1.30115 0.91119 0.91110 0.88399 0.92960 0.92962 0.80354 0.81930 0.77021 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 10.28 71.98 0.74 -2.09 15 2 C 0.06 1.77 6.04 71.98 0.43 2.20 15 3 O -0.31 -10.86 10.13 -89.87 -0.91 -11.77 15 4 C 0.33 13.59 7.49 84.79 0.64 14.22 15 5 C -0.11 -4.35 11.17 84.85 0.95 -3.40 15 6 N -0.38 -16.28 10.48 -194.09 -2.03 -18.32 15 7 C -0.08 -3.79 10.48 84.90 0.89 -2.90 15 8 C 0.33 16.04 7.63 133.01 1.01 17.06 15 9 N -0.52 -26.53 5.44 -188.98 -1.03 -27.56 15 10 C -0.33 -16.21 9.55 84.04 0.80 -15.40 15 11 H 0.12 5.54 5.67 -2.91 -0.02 5.53 15 12 C -0.02 -0.74 5.50 84.87 0.47 -0.28 15 13 N -0.91 -47.42 13.05 21.65 0.28 -47.14 15 14 Si 1.01 38.06 29.55 68.60 2.03 40.09 15 15 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 16 H -0.28 -10.25 7.11 99.48 0.71 -9.54 15 17 H -0.28 -10.25 7.11 99.48 0.71 -9.55 15 18 N -0.61 -28.00 9.42 -305.59 -2.88 -30.88 15 19 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.07 1.33 8.14 -2.38 -0.02 1.31 15 21 H 0.10 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.05 1.67 8.11 -2.39 -0.02 1.65 15 23 H 0.05 1.67 8.11 -2.38 -0.02 1.65 15 24 H 0.18 5.84 8.06 -2.91 -0.02 5.82 15 25 H 0.16 7.03 5.94 -2.91 -0.02 7.01 15 26 H 0.40 20.86 8.02 -92.71 -0.74 20.12 15 27 H 0.28 13.66 8.31 -92.71 -0.77 12.89 15 Total: -1.00 -56.48 244.18 1.84 -54.64 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.45 Total: 31.51 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.93 Total: 9.41 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -5.66 Total: -123.88 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.91 Total: -11.77 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -56.48 1.84 -54.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531138.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.837 kcal (2) G-P(sol) polarization free energy of solvation -56.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds