Wall clock time and date at job start Sun Mar 29 2020 21:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.47100 * 2 1 4 4 C 1.35515 * 116.99801 * 179.97438 * 3 2 1 5 5 C 1.39484 * 120.46458 * 180.02562 * 4 3 2 6 6 C 1.38260 * 118.50619 * 179.97438 * 5 4 3 7 7 N 1.32415 * 119.26249 * 359.97438 * 6 5 4 8 8 C 1.32503 * 120.89618 * 0.02562 * 7 6 5 9 9 N 1.38422 * 119.19115 * 180.02562 * 8 7 6 10 10 C 1.36988 * 120.00106 * 359.97438 * 9 8 7 11 11 H 1.08007 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.38834 * 120.00350 * 180.02562 * 10 9 8 13 13 N 1.31542 * 119.99810 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00100 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47039 * 59.99557 * 14 12 10 16 16 H 1.48500 * 109.47129 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.46818 * 299.99732 * 14 12 10 18 18 N 1.32539 * 121.62398 * 359.73770 * 8 7 6 19 19 H 1.08996 * 109.47065 * 300.00233 * 1 2 3 20 20 H 1.08996 * 109.46551 * 59.99959 * 1 2 3 21 21 H 1.08994 * 109.47248 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47065 * 239.99767 * 2 1 3 23 23 H 1.08999 * 109.47055 * 119.99973 * 2 1 3 24 24 H 1.08003 * 120.75045 * 359.97438 * 5 4 3 25 25 H 1.07996 * 120.36935 * 179.97438 * 6 5 4 26 26 H 0.97004 * 120.00372 * 180.02562 * 9 8 7 27 27 H 0.97003 * 120.00055 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3499 1.5248 0.0005 5 6 3.8935 2.8094 0.0011 6 6 5.2696 2.9435 0.0022 7 7 6.0259 1.8566 0.0032 8 6 5.4812 0.6487 0.0026 9 7 6.3052 -0.4635 0.0042 10 6 7.6662 -0.3076 0.0058 11 1 8.0963 0.6832 0.0054 12 6 8.4928 -1.4231 0.0069 13 7 7.9690 -2.6297 0.0068 14 14 10.3487 -1.2104 0.0098 15 1 10.7588 -0.4587 1.2230 16 1 10.9998 -2.5450 0.0111 17 1 10.7626 -0.4583 -1.2021 18 7 4.1667 0.4791 0.0062 19 1 -0.3633 0.5138 0.8899 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 3.2539 3.6796 0.0007 25 1 5.7226 3.9239 0.0022 26 1 5.9191 -1.3533 0.0034 27 1 8.5465 -3.4091 0.0080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533388.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:54 Heat of formation + Delta-G solvation = 11.279116 kcal Electronic energy + Delta-G solvation = -13155.054316 eV Core-core repulsion = 10720.594441 eV Total energy + Delta-G solvation = -2434.459875 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.95228 -37.90633 -35.21983 -32.26462 -32.13296 -30.96926 -28.89078 -25.05485 -23.84211 -22.03758 -21.85499 -18.37383 -17.80063 -16.47612 -15.83113 -15.42905 -14.40760 -14.33183 -13.91097 -13.86833 -13.33451 -12.95165 -12.54032 -12.30012 -11.67803 -11.31397 -11.30964 -10.71979 -10.61060 -10.40681 -10.22315 -9.71952 -9.28477 -8.63854 -8.08154 -7.32521 -6.64654 -3.86353 2.24313 2.37516 3.15897 3.18153 3.19231 3.53502 3.96887 4.57058 4.71102 5.20893 5.25572 5.30290 5.30441 5.52683 5.75551 6.02655 6.02944 6.13242 6.21309 6.33715 6.54769 7.13823 7.38898 7.60574 7.93334 8.25171 8.60080 8.99013 9.21691 9.80896 10.51443 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.047038 B = 0.007701 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.118148 B = 3635.051432 C = 4209.723028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.313 6.313 4 C 0.403 3.597 5 C -0.378 4.378 6 C 0.215 3.785 7 N -0.589 5.589 8 C 0.521 3.479 9 N -0.498 5.498 10 C -0.283 4.283 11 H 0.117 0.883 12 C 0.020 3.980 13 N -0.887 5.887 14 Si 0.942 3.058 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.270 1.270 18 N -0.650 5.650 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.153 0.847 26 H 0.410 0.590 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 4.537 -0.023 8.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.219 6.219 4 C 0.211 3.789 5 C -0.410 4.410 6 C 0.043 3.957 7 N -0.317 5.317 8 C 0.167 3.833 9 N -0.109 5.109 10 C -0.414 4.414 11 H 0.135 0.865 12 C -0.185 4.185 13 N -0.524 5.524 14 Si 0.768 3.232 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.195 1.195 18 N -0.394 5.394 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.142 0.858 25 H 0.170 0.830 26 H 0.247 0.753 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.693 3.479 -0.015 7.543 hybrid contribution 0.106 0.051 -0.003 0.117 sum -6.588 3.530 -0.018 7.474 Atomic orbital electron populations 1.21801 0.93717 1.02398 1.02845 1.22479 0.93931 0.81996 1.02592 1.86154 1.18008 1.29855 1.87862 1.19506 0.82724 0.89792 0.86921 1.20905 0.96596 0.95084 1.28450 1.22404 0.89104 0.96579 0.87563 1.67887 1.39664 0.97558 1.26570 1.18660 0.83280 0.86805 0.94599 1.40573 1.05040 1.04256 1.60986 1.19983 0.79512 0.95635 1.46278 0.86516 1.25467 1.01641 0.94451 0.96940 1.69685 1.37220 0.97990 1.47520 0.85724 0.80563 0.77533 0.79351 1.19528 1.20771 1.19521 1.67244 1.04882 1.34008 1.33273 0.91966 0.91961 0.90734 0.91856 0.91841 0.85775 0.82983 0.75281 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.34 15 2 C 0.07 1.03 6.06 37.16 0.23 1.26 15 3 O -0.31 -5.82 10.13 -18.24 -0.18 -6.00 15 4 C 0.40 8.53 7.53 -16.72 -0.13 8.40 15 5 C -0.38 -7.31 10.12 -39.11 -0.40 -7.70 15 6 C 0.22 4.23 11.29 -17.29 -0.20 4.04 15 7 N -0.59 -14.06 9.09 -13.97 -0.13 -14.19 15 8 C 0.52 13.16 8.38 -322.71 -2.70 10.46 15 9 N -0.50 -13.19 5.43 -12.79 -0.07 -13.26 15 10 C -0.28 -7.59 9.69 -15.03 -0.15 -7.74 15 11 H 0.12 3.13 7.05 -52.48 -0.37 2.76 15 12 C 0.02 0.51 5.50 -17.46 -0.10 0.41 15 13 N -0.89 -23.79 13.05 55.49 0.72 -23.06 15 14 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 15 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 16 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 18 N -0.65 -15.29 9.40 -13.96 -0.13 -15.42 15 19 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.06 1.04 8.12 -51.93 -0.42 0.61 15 23 H 0.06 1.04 8.11 -51.93 -0.42 0.62 15 24 H 0.12 2.04 8.06 -52.48 -0.42 1.61 15 25 H 0.15 2.31 8.06 -52.49 -0.42 1.89 15 26 H 0.41 10.96 8.01 -40.82 -0.33 10.63 15 27 H 0.28 6.99 8.31 -40.82 -0.34 6.65 15 LS Contribution 246.97 15.07 3.72 3.72 Total: -1.00 -28.92 246.97 -6.93 -35.86 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -2.79 Total: 9.47 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -3.06 Total: 7.78 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: 0.40 Total: -65.93 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.18 Total: -6.00 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.92 -6.93 -35.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533388.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.138 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds