Wall clock time and date at job start Sun Mar 29 2020 21:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00193 * 2 1 4 4 C 1.50706 * 109.46934 * 179.97438 * 3 2 1 5 5 C 1.38675 * 120.40263 * 359.97438 * 4 3 2 6 6 C 1.38642 * 118.55615 * 179.72805 * 5 4 3 7 7 N 1.32249 * 119.19199 * 0.25219 * 6 5 4 8 8 C 1.32521 * 120.74792 * 0.02562 * 7 6 5 9 9 N 1.38435 * 119.22051 * 179.97438 * 8 7 6 10 10 C 1.36987 * 119.99848 * 359.97438 * 9 8 7 11 11 H 1.07999 * 120.00103 * 359.97438 * 10 9 8 12 12 C 1.38835 * 120.00069 * 180.02562 * 10 9 8 13 13 N 1.31547 * 119.99755 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00047 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47126 * 90.00180 * 14 12 10 16 16 H 1.48501 * 109.47379 * 209.99980 * 14 12 10 17 17 H 1.48500 * 109.47262 * 330.00397 * 14 12 10 18 18 N 1.32226 * 120.40006 * 180.21709 * 4 3 2 19 19 H 1.09000 * 109.47175 * 300.00181 * 1 2 3 20 20 H 1.09000 * 109.46730 * 59.99772 * 1 2 3 21 21 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47388 * 60.00042 * 3 2 1 23 23 H 1.09004 * 109.47141 * 299.99633 * 3 2 1 24 24 H 1.08002 * 120.72582 * 0.02562 * 5 4 3 25 25 H 1.07993 * 120.40302 * 180.23234 * 6 5 4 26 26 H 0.97003 * 120.00559 * 179.97438 * 9 8 7 27 27 H 0.97000 * 119.99374 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1177 -0.0615 0.0016 6 6 5.5026 -0.1265 -0.0036 7 7 6.2010 0.9965 -0.0042 8 6 5.5917 2.1734 0.0005 9 7 6.3539 3.3290 0.0002 10 6 7.7213 3.2476 -0.0045 11 1 8.2048 2.2818 -0.0075 12 6 8.4857 4.4065 -0.0043 13 7 9.7989 4.3283 -0.0083 14 14 7.6496 6.0769 0.0016 15 1 7.4322 6.5166 1.4032 16 1 8.5102 7.0638 -0.6988 17 1 6.3417 5.9782 -0.6947 18 7 4.2697 2.2703 0.0051 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.6886 1.8464 0.8900 23 1 1.6887 1.8463 -0.8900 24 1 3.5231 -0.9631 0.0016 25 1 6.0048 -1.0825 -0.0067 26 1 5.9197 4.1964 0.0033 27 1 10.3329 5.1380 -0.0085 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533522.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:12 Heat of formation + Delta-G solvation = 17.535428 kcal Electronic energy + Delta-G solvation = -13059.181555 eV Core-core repulsion = 10624.992974 eV Total energy + Delta-G solvation = -2434.188581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.89883 -37.76927 -35.46718 -32.92678 -32.25872 -30.03183 -27.66478 -25.81500 -24.69521 -22.71451 -21.06427 -18.58226 -16.99066 -16.57889 -15.88450 -15.46534 -15.21844 -14.50812 -14.09782 -14.06917 -13.25593 -13.08862 -12.65839 -12.28492 -12.00274 -11.44090 -11.34839 -10.69636 -10.46927 -10.17949 -10.01260 -9.77344 -9.45815 -8.91400 -8.04575 -7.47867 -6.48684 -3.81661 2.09199 2.17770 3.04549 3.05561 3.10085 3.54249 3.99459 4.35982 4.64527 4.98989 5.19449 5.26483 5.27758 5.37571 5.43970 5.56431 5.63425 6.05998 6.22072 6.31017 6.60217 7.14895 7.24743 7.45842 7.87771 8.26468 8.50833 8.83655 9.21215 9.63476 10.62043 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.056777 B = 0.007316 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.037614 B = 3826.254322 C = 4298.842642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.119 3.881 4 C 0.214 3.786 5 C -0.334 4.334 6 C 0.193 3.807 7 N -0.562 5.562 8 C 0.512 3.488 9 N -0.535 5.535 10 C -0.285 4.285 11 H 0.132 0.868 12 C 0.041 3.959 13 N -0.868 5.868 14 Si 0.878 3.122 15 H -0.268 1.268 16 H -0.273 1.273 17 H -0.265 1.265 18 N -0.602 5.602 19 H 0.040 0.960 20 H 0.040 0.960 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.131 0.869 25 H 0.150 0.850 26 H 0.389 0.611 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 -4.471 0.018 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.042 3.958 4 C 0.062 3.938 5 C -0.365 4.365 6 C 0.020 3.980 7 N -0.286 5.286 8 C 0.157 3.843 9 N -0.149 5.149 10 C -0.416 4.416 11 H 0.150 0.850 12 C -0.165 4.165 13 N -0.504 5.504 14 Si 0.704 3.296 15 H -0.193 1.193 16 H -0.198 1.198 17 H -0.191 1.191 18 N -0.330 5.330 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.149 0.851 25 H 0.167 0.833 26 H 0.225 0.775 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.089 -3.476 0.019 13.543 hybrid contribution -1.140 0.729 -0.008 1.353 sum -14.229 -2.747 0.011 14.492 Atomic orbital electron populations 1.22726 0.81006 1.02676 0.99954 1.87862 1.19381 1.27376 1.95487 1.20879 0.89183 0.84384 1.01382 1.20404 0.93688 0.89056 0.90639 1.21695 0.96284 0.98787 1.19720 1.22711 0.90809 0.95940 0.88526 1.67933 1.40226 0.97471 1.22997 1.18751 0.83888 0.86710 0.94923 1.40728 1.05960 1.03046 1.65213 1.19659 0.77942 0.97626 1.46323 0.85020 1.25038 0.95454 0.98429 0.97540 1.69666 1.03729 1.29840 1.47178 0.86635 0.79750 0.83871 0.79328 1.19286 1.19766 1.19078 1.67197 1.05560 1.33140 1.27109 0.94102 0.94097 0.89571 0.91307 0.91307 0.85120 0.83283 0.77455 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 15 2 O -0.38 -5.24 9.26 -35.23 -0.33 -5.57 15 3 C 0.12 1.76 6.50 36.01 0.23 1.99 15 4 C 0.21 4.12 6.82 -82.26 -0.56 3.56 15 5 C -0.33 -6.20 9.48 -39.27 -0.37 -6.58 15 6 C 0.19 3.82 11.30 -17.22 -0.19 3.62 15 7 N -0.56 -13.56 9.10 -13.90 -0.13 -13.69 15 8 C 0.51 12.64 8.38 -322.66 -2.70 9.94 15 9 N -0.53 -13.61 5.23 -12.78 -0.07 -13.67 15 10 C -0.29 -7.93 10.17 -15.03 -0.15 -8.08 15 11 H 0.13 4.00 7.28 -52.49 -0.38 3.62 15 12 C 0.04 1.10 5.50 -17.45 -0.10 1.01 15 13 N -0.87 -24.61 13.96 55.49 0.77 -23.84 15 14 Si 0.88 19.63 27.73 -169.99 -4.71 14.92 15 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 17 H -0.27 -5.68 6.52 56.52 0.37 -5.31 15 18 N -0.60 -13.44 10.40 -10.12 -0.11 -13.55 15 19 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 15 20 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 15 21 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.13 2.14 7.11 -52.49 -0.37 1.77 15 25 H 0.15 2.37 8.06 -52.49 -0.42 1.94 15 26 H 0.39 9.27 5.87 -40.82 -0.24 9.03 15 27 H 0.28 7.26 8.31 -40.82 -0.34 6.92 15 LS Contribution 242.91 15.07 3.66 3.66 Total: -1.00 -30.57 242.91 -6.34 -36.91 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -2.70 Total: 7.95 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -2.73 Total: 6.88 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: 0.48 Total: -64.74 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.33 Total: -5.57 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.57 -6.34 -36.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533522.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.443 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds