Wall clock time and date at job start Sun Mar 29 2020 21:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99965 * 2 1 4 4 C 1.50705 * 109.47040 * 179.97438 * 3 2 1 5 5 C 1.38817 * 119.98501 * 359.97438 * 4 3 2 6 6 C 1.38566 * 118.04688 * 180.02562 * 5 4 3 7 7 C 1.39580 * 117.90315 * 0.02562 * 6 5 4 8 8 N 1.38873 * 120.16406 * 180.02562 * 7 6 5 9 9 C 1.36907 * 120.00121 * 359.97438 * 8 7 6 10 10 H 1.08000 * 119.99784 * 0.02562 * 9 8 7 11 11 C 1.38823 * 120.00025 * 180.02562 * 9 8 7 12 12 N 1.31558 * 119.99949 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99843 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47230 * 90.00060 * 13 11 9 15 15 H 1.48497 * 109.47357 * 210.00050 * 13 11 9 16 16 H 1.48504 * 109.47000 * 330.00076 * 13 11 9 17 17 N 1.32576 * 119.67131 * 359.97438 * 7 6 5 18 18 N 1.28354 * 122.05810 * 359.97438 * 17 7 6 19 19 H 1.08992 * 109.47146 * 300.00290 * 1 2 3 20 20 H 1.08997 * 109.46751 * 60.00489 * 1 2 3 21 21 H 1.09005 * 109.46581 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47151 * 59.99792 * 3 2 1 23 23 H 1.09000 * 109.47217 * 299.99675 * 3 2 1 24 24 H 1.07998 * 120.98078 * 0.02562 * 5 4 3 25 25 H 1.08000 * 121.05115 * 179.97438 * 6 5 4 26 26 H 0.97001 * 120.00039 * 179.97438 * 8 7 6 27 27 H 0.97007 * 119.99888 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1092 -0.0670 0.0016 6 6 5.4934 -0.1296 0.0027 7 6 6.2017 1.0731 0.0033 8 7 7.5904 1.0651 0.0039 9 6 8.2681 -0.1245 0.0044 10 1 7.7228 -1.0566 0.0040 11 6 9.6564 -0.1324 0.0055 12 7 10.3207 1.0031 0.0056 13 14 10.5810 -1.7555 0.0055 14 1 10.8272 -2.1850 -1.3945 15 1 11.8790 -1.5858 0.7067 16 1 9.7719 -2.7861 0.7044 17 7 5.5422 2.2232 0.0023 18 7 4.2596 2.2730 0.0003 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6886 1.8463 0.8899 23 1 1.6886 1.8463 -0.8900 24 1 3.5121 -0.9669 0.0016 25 1 6.0081 -1.0791 0.0040 26 1 8.0803 1.9023 0.0039 27 1 11.2907 0.9975 0.0067 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537426.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:09 Heat of formation + Delta-G solvation = -6.728797 kcal Electronic energy + Delta-G solvation = -12982.928870 eV Core-core repulsion = 10547.688113 eV Total energy + Delta-G solvation = -2435.240757 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.50946 -38.77999 -37.53860 -34.28104 -33.73903 -31.73250 -28.68175 -27.05638 -25.83062 -24.97095 -23.03814 -19.93223 -18.76389 -17.96088 -17.01619 -16.85606 -16.73045 -16.31963 -15.60312 -15.46011 -15.04211 -14.13670 -13.71490 -13.54675 -13.48279 -13.10374 -12.39245 -12.35532 -12.26634 -12.10243 -11.69395 -10.96044 -10.86529 -10.53317 -10.21162 -9.16538 -8.59391 -5.91374 0.28662 0.50252 1.42582 1.48926 1.56450 2.18415 2.62610 2.74188 3.00856 3.23082 3.88822 4.09035 4.19216 4.27319 4.43308 4.54346 4.65289 4.71130 4.72204 4.95217 5.05030 5.25251 5.34641 5.56509 5.78858 6.28994 6.64770 7.20821 7.34316 8.28598 8.58615 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.063601 B = 0.006576 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.137853 B = 4257.086074 C = 4676.779040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.149 3.851 4 C -0.061 4.061 5 C -0.048 4.048 6 C -0.206 4.206 7 C 0.283 3.717 8 N -0.538 5.538 9 C -0.329 4.329 10 H 0.117 0.883 11 C -0.021 4.021 12 N -0.919 5.919 13 Si 1.009 2.991 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.254 1.254 17 N -0.380 5.380 18 N -0.216 5.216 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.102 0.898 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.166 0.834 25 H 0.148 0.852 26 H 0.396 0.604 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 -5.710 0.015 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C 0.071 3.929 4 C -0.215 4.215 5 C -0.076 4.076 6 C -0.240 4.240 7 C 0.036 3.964 8 N -0.146 5.146 9 C -0.459 4.459 10 H 0.135 0.865 11 C -0.222 4.222 12 N -0.556 5.556 13 Si 0.831 3.169 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.177 1.177 17 N -0.239 5.239 18 N -0.060 5.060 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.120 0.880 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.184 0.816 25 H 0.165 0.835 26 H 0.230 0.770 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.400 -4.397 0.019 13.157 hybrid contribution 0.830 -1.208 -0.011 1.465 sum -11.570 -5.605 0.008 12.856 Atomic orbital electron populations 1.22967 0.78648 1.04142 1.01146 1.87756 1.21955 1.27323 1.95700 1.20510 0.85826 0.84776 1.01822 1.22226 0.97756 0.91097 1.10383 1.21976 0.93240 0.99600 0.92736 1.21818 0.94888 0.98247 1.09091 1.20243 0.87040 0.92457 0.96644 1.40767 1.00289 1.09470 1.64061 1.20175 0.90075 0.86115 1.49509 0.86498 1.26394 0.97161 1.02824 0.95827 1.69814 1.09504 1.28248 1.48065 0.84673 0.77262 0.76138 0.78833 1.19459 1.20468 1.17712 1.72763 1.01463 1.23108 1.26577 1.72134 0.98804 1.28216 1.06866 0.92906 0.92912 0.88008 0.90917 0.90907 0.81620 0.83479 0.77003 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 15 2 O -0.41 -10.32 9.22 -148.98 -1.37 -11.69 15 3 C 0.15 4.15 6.49 71.24 0.46 4.62 15 4 C -0.06 -2.30 6.87 42.70 0.29 -2.01 15 5 C -0.05 -1.78 9.49 22.49 0.21 -1.57 15 6 C -0.21 -8.78 9.42 22.67 0.21 -8.56 15 7 C 0.28 14.00 7.71 133.16 1.03 15.02 15 8 N -0.54 -28.29 5.44 -188.84 -1.03 -29.32 15 9 C -0.33 -16.79 9.56 84.04 0.80 -15.99 15 10 H 0.12 5.48 5.71 -2.91 -0.02 5.46 15 11 C -0.02 -1.04 5.50 84.87 0.47 -0.57 15 12 N -0.92 -49.58 13.05 21.65 0.28 -49.30 15 13 Si 1.01 38.91 29.55 68.60 2.03 40.94 15 14 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 15 H -0.28 -10.68 7.11 99.48 0.71 -9.97 15 16 H -0.25 -9.13 7.11 99.48 0.71 -8.42 15 17 N -0.38 -19.08 11.54 -55.10 -0.64 -19.71 15 18 N -0.22 -9.69 11.42 -47.53 -0.54 -10.24 15 19 H 0.05 0.72 8.14 -2.39 -0.02 0.71 15 20 H 0.05 0.72 8.14 -2.39 -0.02 0.70 15 21 H 0.10 1.27 8.14 -2.38 -0.02 1.26 15 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.17 5.07 7.09 -2.91 -0.02 5.05 15 25 H 0.15 5.82 6.05 -2.91 -0.02 5.80 15 26 H 0.40 21.99 8.02 -92.71 -0.74 21.24 15 27 H 0.28 14.15 8.31 -92.70 -0.77 13.38 15 Total: -1.00 -61.18 243.47 3.91 -57.26 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.45 Total: 29.45 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 4.73 Total: -7.39 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -1.92 Total: -108.57 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.37 Total: -11.69 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -61.18 3.91 -57.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537426.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.534 kcal (2) G-P(sol) polarization free energy of solvation -61.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds