Wall clock time and date at job start Sun Mar 29 2020 21:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35753 * 117.00107 * 2 1 4 4 N 1.32272 * 120.04332 * 359.97438 * 3 2 1 5 5 N 1.28356 * 122.20253 * 179.74800 * 4 3 2 6 6 C 1.32458 * 122.13969 * 0.55136 * 5 4 3 7 7 N 1.39005 * 120.10457 * 179.74429 * 6 5 4 8 8 C 1.36884 * 120.00275 * 179.72172 * 7 6 5 9 9 H 1.07999 * 119.99973 * 359.97438 * 8 7 6 10 10 C 1.38795 * 120.00161 * 179.97438 * 8 7 6 11 11 N 1.31590 * 119.99941 * 359.72770 * 10 8 7 12 12 Si 1.86795 * 120.00111 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47314 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46947 * 120.00390 * 12 10 8 15 15 H 1.48499 * 109.47726 * 239.99954 * 12 10 8 16 16 C 1.39643 * 119.79236 * 359.46276 * 6 5 4 17 17 C 1.38411 * 117.95690 * 0.25472 * 16 6 5 18 18 C 1.50705 * 121.00044 * 180.02562 * 17 16 6 19 19 H 1.09000 * 109.47029 * 299.99791 * 1 2 3 20 20 H 1.09002 * 109.46979 * 59.99987 * 1 2 3 21 21 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 22 22 H 0.97004 * 120.00262 * 359.71567 * 7 6 5 23 23 H 0.97000 * 120.00301 * 180.02562 * 11 10 8 24 24 H 1.08000 * 121.01748 * 180.27845 * 16 6 5 25 25 H 1.08994 * 109.47378 * 89.99634 * 18 17 16 26 26 H 1.08999 * 109.47057 * 210.00365 * 18 17 16 27 27 H 1.09004 * 109.46721 * 329.99712 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3258 2.3194 -0.0005 5 7 1.8650 3.4842 0.0042 6 6 3.1788 3.6525 -0.0008 7 7 3.7176 4.9339 -0.0007 8 6 5.0757 5.1054 -0.0002 9 1 5.7286 4.2451 0.0006 10 6 5.6136 6.3849 -0.0006 11 7 4.8181 7.4331 -0.0069 12 14 7.4668 6.6189 0.0009 13 1 8.1334 5.2919 0.0017 14 1 7.8713 7.3747 -1.2118 15 1 7.8693 7.3763 1.2131 16 6 4.0210 2.5386 -0.0003 17 6 3.4372 1.2837 0.0001 18 6 4.2810 0.0350 0.0013 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1312 5.7067 -0.0011 23 1 5.1940 8.3273 -0.0076 24 1 5.0950 2.6529 0.0001 25 1 4.4839 -0.2654 1.0291 26 1 3.7473 -0.7646 -0.5124 27 1 5.2220 0.2321 -0.5123 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181598.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:39 Heat of formation + Delta-G solvation = -2.022078 kcal Electronic energy + Delta-G solvation = -13276.859038 eV Core-core repulsion = 10841.822380 eV Total energy + Delta-G solvation = -2435.036658 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.76694 -39.20445 -37.22798 -35.03209 -33.98405 -30.66561 -28.77996 -28.33065 -26.70627 -24.21781 -22.96337 -20.17180 -18.89476 -18.63690 -17.73915 -16.99845 -16.24171 -15.67020 -15.23609 -15.08025 -14.80143 -14.06929 -13.97295 -13.45534 -13.25434 -13.14166 -12.79938 -12.61462 -12.33438 -12.13864 -11.95673 -11.87478 -10.83477 -10.24453 -10.19557 -8.93849 -8.52965 -5.83848 0.13460 0.56376 1.45577 1.50293 1.59984 2.19162 2.34801 2.73728 2.98056 3.24321 3.75433 3.85134 4.20762 4.30095 4.48048 4.50992 4.58229 4.81367 4.85115 4.95821 5.10445 5.19881 5.31895 5.48369 5.77951 6.40390 6.70757 7.27227 7.39704 8.25008 8.65571 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.057464 B = 0.007790 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.142488 B = 3593.626225 C = 4060.320289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.313 6.313 3 C 0.142 3.858 4 N -0.273 5.273 5 N -0.365 5.365 6 C 0.277 3.723 7 N -0.544 5.544 8 C -0.323 4.323 9 H 0.119 0.881 10 C -0.024 4.024 11 N -0.923 5.923 12 Si 1.007 2.993 13 H -0.248 1.248 14 H -0.279 1.279 15 H -0.279 1.279 16 C -0.173 4.173 17 C -0.052 4.052 18 C -0.096 4.096 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.129 0.871 22 H 0.395 0.605 23 H 0.278 0.722 24 H 0.159 0.841 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -12.216 0.040 12.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.219 6.219 3 C -0.052 4.052 4 N -0.126 5.126 5 N -0.225 5.225 6 C 0.029 3.971 7 N -0.156 5.156 8 C -0.453 4.453 9 H 0.136 0.864 10 C -0.224 4.224 11 N -0.562 5.562 12 Si 0.830 3.170 13 H -0.172 1.172 14 H -0.205 1.205 15 H -0.204 1.204 16 C -0.207 4.207 17 C -0.062 4.062 18 C -0.152 4.152 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.147 0.853 22 H 0.229 0.771 23 H 0.088 0.912 24 H 0.176 0.824 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.153 -11.513 0.037 11.514 hybrid contribution 1.191 0.649 0.003 1.356 sum 1.344 -10.864 0.041 10.947 Atomic orbital electron populations 1.22973 0.77004 1.04409 1.01367 1.86080 1.23097 1.22662 1.90072 1.20968 0.90919 0.86772 1.06550 1.72319 1.32605 0.94418 1.13247 1.72512 1.09456 1.13847 1.26685 1.20189 0.91111 0.88153 0.97629 1.40681 1.07024 1.02258 1.65647 1.20168 0.81222 0.94816 1.49104 0.86381 1.26341 1.05641 0.94200 0.96267 1.69835 1.37977 0.99413 1.48953 0.84641 0.75307 0.79371 0.77713 1.17154 1.20475 1.20447 1.21660 1.01684 0.89931 1.07443 1.20416 0.91274 0.97258 0.97286 1.20697 0.98543 0.92076 1.03927 0.93610 0.93624 0.85252 0.77086 0.91221 0.82355 0.89225 0.89900 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.40 113.37 1.18 2.16 15 2 O -0.31 -10.33 9.65 -90.79 -0.88 -11.21 15 3 C 0.14 5.64 7.55 84.90 0.64 6.28 15 4 N -0.27 -12.40 10.39 -170.15 -1.77 -14.17 15 5 N -0.36 -18.24 11.53 -55.04 -0.63 -18.87 15 6 C 0.28 13.44 7.71 133.17 1.03 14.47 15 7 N -0.54 -28.21 5.45 -188.80 -1.03 -29.24 15 8 C -0.32 -16.18 9.56 84.04 0.80 -15.38 15 9 H 0.12 5.35 5.71 -2.91 -0.02 5.34 15 10 C -0.02 -1.19 5.50 84.86 0.47 -0.72 15 11 N -0.92 -49.72 13.05 21.65 0.28 -49.44 15 12 Si 1.01 38.56 29.55 68.60 2.03 40.58 15 13 H -0.25 -8.67 7.11 99.48 0.71 -7.96 15 14 H -0.28 -10.63 7.11 99.48 0.71 -9.92 15 15 H -0.28 -10.61 7.11 99.48 0.71 -9.90 15 16 C -0.17 -7.11 9.13 22.65 0.21 -6.91 15 17 C -0.05 -1.88 5.94 -19.55 -0.12 -1.99 15 18 C -0.10 -2.40 9.86 71.24 0.70 -1.70 15 19 H 0.05 1.26 8.11 -2.39 -0.02 1.24 15 20 H 0.04 1.25 8.11 -2.39 -0.02 1.24 15 21 H 0.13 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.40 21.78 8.01 -92.71 -0.74 21.04 15 23 H 0.28 14.02 8.31 -92.71 -0.77 13.25 15 24 H 0.16 5.90 6.05 -2.91 -0.02 5.88 15 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.08 1.93 7.62 -2.39 -0.02 1.91 15 27 H 0.09 1.87 8.11 -2.39 -0.02 1.85 15 Total: -1.00 -61.34 242.91 3.37 -57.97 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.46 Total: 28.16 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 4.91 Total: -3.78 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -3.15 Total: -111.72 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.88 Total: -11.21 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.58 kcal Total: -61.34 3.37 -57.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181598.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.945 kcal (2) G-P(sol) polarization free energy of solvation -61.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds