Wall clock time and date at job start Sun Mar 29 2020 21:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 116.99918 * 2 1 4 4 C 1.38636 * 120.89022 * 359.71326 * 3 2 1 5 5 N 1.32536 * 119.12490 * 179.70064 * 4 3 2 6 6 C 1.31779 * 121.06651 * 0.61493 * 5 4 3 7 7 C 1.50699 * 119.01563 * 179.68230 * 6 5 4 8 8 N 1.31743 * 121.97269 * 359.65931 * 6 5 4 9 9 C 1.32980 * 120.74871 * 0.02562 * 8 6 5 10 10 N 1.38606 * 120.56905 * 179.97438 * 9 8 6 11 11 C 1.36888 * 120.00223 * 0.02562 * 10 9 8 12 12 H 1.07998 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.38835 * 120.00081 * 179.97438 * 11 10 9 14 14 N 1.31548 * 120.00066 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99552 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47422 * 60.00446 * 15 13 11 17 17 H 1.48503 * 109.46773 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47466 * 299.99980 * 15 13 11 19 19 H 1.09002 * 109.47382 * 300.00462 * 1 2 3 20 20 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46926 * 60.00569 * 1 2 3 22 22 H 1.08004 * 120.44092 * 0.02562 * 4 3 2 23 23 H 1.09000 * 109.46941 * 269.97894 * 7 6 5 24 24 H 1.09000 * 109.46693 * 29.97497 * 7 6 5 25 25 H 1.08997 * 109.47365 * 149.97708 * 7 6 5 26 26 H 0.96999 * 120.00024 * 180.02562 * 10 9 8 27 27 H 0.96999 * 119.99751 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.3094 2.3857 -0.0060 5 7 1.9471 3.5476 0.0003 6 6 3.2638 3.6005 -0.0001 7 6 3.9412 4.9467 -0.0001 8 7 4.0058 2.5119 0.0000 9 6 3.4443 1.3065 0.0000 10 7 4.2285 0.1636 -0.0005 11 6 5.5933 0.2699 -0.0004 12 1 6.0590 1.2443 0.0005 13 6 6.3788 -0.8749 -0.0003 14 7 5.8115 -2.0618 -0.0008 15 14 8.2411 -0.7297 0.0006 16 1 8.6797 0.0063 1.2134 17 1 8.8434 -2.0871 -0.0001 18 1 8.6808 0.0070 -1.2115 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 0.2298 2.3543 -0.0103 23 1 4.1045 5.2712 -1.0278 24 1 3.3094 5.6713 0.5136 25 1 4.8995 4.8713 0.5137 26 1 3.8103 -0.7116 -0.0009 27 1 6.3603 -2.8616 -0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182143.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:39 Heat of formation + Delta-G solvation = 9.028633 kcal Electronic energy + Delta-G solvation = -13436.833965 eV Core-core repulsion = 11002.276502 eV Total energy + Delta-G solvation = -2434.557463 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.00085 -37.55144 -35.74225 -32.52840 -31.69127 -29.99141 -27.85806 -26.19372 -25.05749 -22.05487 -21.36533 -18.31913 -17.28175 -16.59891 -16.14756 -15.29947 -14.60716 -14.12928 -13.91854 -13.81158 -13.01904 -12.47334 -12.29868 -11.74995 -11.68351 -11.40374 -11.37808 -10.77175 -10.74630 -10.66755 -10.42082 -9.92843 -9.26848 -8.40887 -7.93067 -7.02803 -6.66585 -3.84075 2.14209 2.38077 3.15331 3.18964 3.19051 3.92533 3.99084 4.68041 4.69931 5.11529 5.18479 5.31435 5.42132 5.50864 5.75633 5.94766 6.01209 6.16824 6.23508 6.43814 6.67436 7.26747 7.39641 7.49586 8.02377 8.26414 8.67551 9.15584 9.21524 9.68447 10.48249 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.010792 C = 0.008000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.689861 B = 2593.819770 C = 3499.062563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.317 6.317 3 C -0.082 4.082 4 C 0.077 3.923 5 N -0.594 5.594 6 C 0.327 3.673 7 C -0.071 4.071 8 N -0.566 5.566 9 C 0.367 3.633 10 N -0.499 5.499 11 C -0.285 4.285 12 H 0.116 0.884 13 C 0.020 3.980 14 N -0.883 5.883 15 Si 0.941 3.059 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.270 1.270 19 H 0.046 0.954 20 H 0.091 0.909 21 H 0.046 0.954 22 H 0.143 0.857 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.414 0.586 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.144 4.207 0.000 6.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.229 6.229 3 C -0.139 4.139 4 C -0.079 4.079 5 N -0.323 5.323 6 C 0.056 3.944 7 C -0.130 4.130 8 N -0.299 5.299 9 C 0.116 3.884 10 N -0.107 5.107 11 C -0.418 4.418 12 H 0.134 0.866 13 C -0.185 4.185 14 N -0.520 5.520 15 Si 0.767 3.233 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.195 1.195 19 H 0.064 0.936 20 H 0.109 0.891 21 H 0.064 0.936 22 H 0.161 0.839 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.251 0.749 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.351 4.452 0.006 6.225 hybrid contribution -0.104 -1.276 -0.020 1.281 sum -4.455 3.176 -0.014 5.471 Atomic orbital electron populations 1.22838 0.80031 1.02864 1.00424 1.85978 1.19873 1.26413 1.90617 1.19849 0.92456 0.86168 1.15476 1.22405 0.98949 0.87097 0.99419 1.67923 1.10359 1.27492 1.26494 1.22445 0.86441 0.93815 0.91691 1.20311 0.99753 0.90476 1.02470 1.67773 1.39016 0.96274 1.26794 1.17798 0.84205 0.87981 0.98376 1.40915 1.05907 1.04376 1.59543 1.20028 0.80341 0.95493 1.45898 0.86586 1.25501 1.01760 0.94457 0.96758 1.69685 1.37459 0.97894 1.46925 0.85738 0.80626 0.77519 0.79408 1.19473 1.20733 1.19477 0.93553 0.89080 0.93552 0.83948 0.91018 0.90916 0.90664 0.74883 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.84 101.05 0.99 1.48 15 2 O -0.32 -6.42 9.86 -19.63 -0.19 -6.61 15 3 C -0.08 -1.83 6.75 -38.73 -0.26 -2.09 15 4 C 0.08 1.56 10.30 -17.10 -0.18 1.38 15 5 N -0.59 -12.68 10.32 -10.69 -0.11 -12.79 15 6 C 0.33 7.08 7.64 -157.25 -1.20 5.88 15 7 C -0.07 -1.17 10.31 36.01 0.37 -0.80 15 8 N -0.57 -13.83 9.14 -9.83 -0.09 -13.92 15 9 C 0.37 9.20 7.48 -154.53 -1.16 8.04 15 10 N -0.50 -13.14 5.41 -10.88 -0.06 -13.20 15 11 C -0.29 -7.68 9.72 -15.07 -0.15 -7.82 15 12 H 0.12 3.13 7.11 -52.49 -0.37 2.75 15 13 C 0.02 0.53 5.50 -17.45 -0.10 0.43 15 14 N -0.88 -23.62 13.05 55.49 0.72 -22.89 15 15 Si 0.94 20.09 29.55 -169.99 -5.02 15.06 15 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 19 H 0.05 0.59 7.72 -51.93 -0.40 0.19 15 20 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.05 0.59 7.70 -51.93 -0.40 0.19 15 22 H 0.14 2.37 6.46 -52.48 -0.34 2.03 15 23 H 0.07 1.07 8.14 -51.93 -0.42 0.64 15 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 26 H 0.41 10.99 7.34 -40.82 -0.30 10.69 15 27 H 0.28 6.98 8.31 -40.82 -0.34 6.65 15 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -29.67 243.42 -5.39 -35.06 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.64 Total: 9.12 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.67 Total: 6.50 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.47 Total: -62.80 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.19 Total: -6.61 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.67 -5.39 -35.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182143.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.093 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds