Wall clock time and date at job start Sun Mar 29 2020 21:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 116.99918 * 2 1 4 4 C 1.38636 * 120.89022 * 359.71326 * 3 2 1 5 5 N 1.32536 * 119.12490 * 179.70064 * 4 3 2 6 6 C 1.31779 * 121.06651 * 0.61493 * 5 4 3 7 7 C 1.50699 * 119.01563 * 179.68230 * 6 5 4 8 8 N 1.31743 * 121.97269 * 359.65931 * 6 5 4 9 9 C 1.32980 * 120.74871 * 0.02562 * 8 6 5 10 10 N 1.38606 * 120.56905 * 179.97438 * 9 8 6 11 11 C 1.36888 * 120.00223 * 0.02562 * 10 9 8 12 12 H 1.07998 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.38835 * 120.00081 * 179.97438 * 11 10 9 14 14 N 1.31548 * 120.00066 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99552 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47422 * 60.00446 * 15 13 11 17 17 H 1.48503 * 109.46773 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47466 * 299.99980 * 15 13 11 19 19 H 1.09002 * 109.47382 * 300.00462 * 1 2 3 20 20 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46926 * 60.00569 * 1 2 3 22 22 H 1.08004 * 120.44092 * 0.02562 * 4 3 2 23 23 H 1.09000 * 109.46941 * 269.97894 * 7 6 5 24 24 H 1.09000 * 109.46693 * 29.97497 * 7 6 5 25 25 H 1.08997 * 109.47365 * 149.97708 * 7 6 5 26 26 H 0.96999 * 120.00024 * 180.02562 * 10 9 8 27 27 H 0.96999 * 119.99751 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.3094 2.3857 -0.0060 5 7 1.9471 3.5476 0.0003 6 6 3.2638 3.6005 -0.0001 7 6 3.9412 4.9467 -0.0001 8 7 4.0058 2.5119 0.0000 9 6 3.4443 1.3065 0.0000 10 7 4.2285 0.1636 -0.0005 11 6 5.5933 0.2699 -0.0004 12 1 6.0590 1.2443 0.0005 13 6 6.3788 -0.8749 -0.0003 14 7 5.8115 -2.0618 -0.0008 15 14 8.2411 -0.7297 0.0006 16 1 8.6797 0.0063 1.2134 17 1 8.8434 -2.0871 -0.0001 18 1 8.6808 0.0070 -1.2115 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 0.2298 2.3543 -0.0103 23 1 4.1045 5.2712 -1.0278 24 1 3.3094 5.6713 0.5136 25 1 4.8995 4.8713 0.5137 26 1 3.8103 -0.7116 -0.0009 27 1 6.3603 -2.8616 -0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182143.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:39 Heat of formation + Delta-G solvation = -11.065288 kcal Electronic energy + Delta-G solvation = -13437.705303 eV Core-core repulsion = 11002.276502 eV Total energy + Delta-G solvation = -2435.428801 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.72123 -39.10236 -37.57649 -34.38952 -33.34103 -31.74817 -29.26587 -27.59007 -26.92734 -23.79892 -23.05232 -20.17830 -18.90694 -18.24959 -17.94011 -16.79480 -16.35529 -15.83658 -15.45307 -15.44452 -14.57359 -14.02502 -13.83128 -13.48193 -13.04732 -13.03170 -12.71986 -12.55632 -12.45685 -12.11060 -12.09146 -11.65075 -11.11145 -10.20626 -9.71428 -8.78323 -8.55795 -5.83028 0.44366 0.59612 1.41886 1.51527 1.54193 2.24133 2.49174 2.86819 2.90389 3.33917 3.55864 3.69667 4.19660 4.31715 4.44995 4.52176 4.72547 4.76128 4.89360 5.01322 5.16150 5.34124 5.60854 5.79770 6.30521 6.56126 6.76344 7.26409 7.36314 7.84877 8.60678 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.010792 C = 0.008000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.689861 B = 2593.819770 C = 3499.062563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.340 6.340 3 C -0.089 4.089 4 C 0.085 3.915 5 N -0.587 5.587 6 C 0.310 3.690 7 C -0.068 4.068 8 N -0.591 5.591 9 C 0.353 3.647 10 N -0.526 5.526 11 C -0.313 4.313 12 H 0.106 0.894 13 C -0.023 4.023 14 N -0.920 5.920 15 Si 1.007 2.993 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.266 1.266 19 H 0.063 0.937 20 H 0.115 0.885 21 H 0.063 0.937 22 H 0.186 0.814 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.407 0.593 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.126 5.554 -0.024 8.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.253 6.253 3 C -0.146 4.146 4 C -0.072 4.072 5 N -0.314 5.314 6 C 0.041 3.959 7 C -0.126 4.126 8 N -0.323 5.323 9 C 0.103 3.897 10 N -0.136 5.136 11 C -0.444 4.444 12 H 0.124 0.876 13 C -0.224 4.224 14 N -0.558 5.558 15 Si 0.829 3.171 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.190 1.190 19 H 0.081 0.919 20 H 0.134 0.866 21 H 0.082 0.918 22 H 0.202 0.798 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.242 0.758 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.363 5.859 -0.019 7.943 hybrid contribution -0.118 -1.519 -0.013 1.524 sum -5.481 4.340 -0.032 6.991 Atomic orbital electron populations 1.23254 0.76757 1.05209 1.01980 1.85966 1.23217 1.25566 1.90512 1.19921 0.91751 0.87709 1.15207 1.23080 1.00808 0.86010 0.97291 1.68069 1.10291 1.27885 1.25164 1.23426 0.86871 0.94904 0.90742 1.20459 0.99958 0.88147 1.04038 1.67833 1.40398 0.96846 1.27229 1.18374 0.85814 0.88121 0.97355 1.40848 1.05776 1.04328 1.62696 1.20090 0.81092 0.95479 1.47718 0.87624 1.26353 1.06000 0.93839 0.96199 1.69774 1.38865 0.98420 1.48755 0.84766 0.75162 0.77702 0.79427 1.19032 1.19951 1.19040 0.91855 0.86638 0.91836 0.79752 0.89203 0.88614 0.90232 0.75752 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.84 113.37 1.12 1.69 15 2 O -0.34 -13.44 9.86 -93.16 -0.92 -14.36 15 3 C -0.09 -3.88 6.75 22.82 0.15 -3.72 15 4 C 0.09 3.22 10.30 84.68 0.87 4.09 15 5 N -0.59 -23.49 10.32 -187.72 -1.94 -25.43 15 6 C 0.31 12.92 7.64 138.77 1.06 13.98 15 7 C -0.07 -2.06 10.31 71.24 0.73 -1.32 15 8 N -0.59 -28.85 9.14 -185.01 -1.69 -30.54 15 9 C 0.35 17.89 7.48 133.27 1.00 18.89 15 10 N -0.53 -28.68 5.41 -188.34 -1.02 -29.70 15 11 C -0.31 -17.41 9.72 84.05 0.82 -16.60 15 12 H 0.11 5.91 7.11 -2.91 -0.02 5.89 15 13 C -0.02 -1.23 5.50 84.88 0.47 -0.76 15 14 N -0.92 -50.73 13.05 21.65 0.28 -50.44 15 15 Si 1.01 41.86 29.55 68.60 2.03 43.89 15 16 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 18 H -0.27 -10.72 7.11 99.48 0.71 -10.02 15 19 H 0.06 1.40 7.72 -2.39 -0.02 1.38 15 20 H 0.12 2.37 8.14 -2.39 -0.02 2.35 15 21 H 0.06 1.40 7.70 -2.38 -0.02 1.39 15 22 H 0.19 5.30 6.46 -2.91 -0.02 5.28 15 23 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 24 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 26 H 0.41 22.59 7.34 -92.71 -0.68 21.91 15 27 H 0.28 14.42 8.31 -92.71 -0.77 13.65 15 Total: -1.00 -65.04 243.42 3.48 -61.56 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.52 Total: 28.77 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.22 Total: 16.25 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -4.37 Total: -136.10 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.92 Total: -14.36 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -65.04 3.48 -61.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182143.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.494 kcal (2) G-P(sol) polarization free energy of solvation -65.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds