Wall clock time and date at job start Sun Mar 29 2020 21:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35795 * 117.00641 * 2 1 4 4 N 1.32281 * 119.67726 * 0.31824 * 3 2 1 5 5 C 1.32102 * 121.91821 * 180.31603 * 4 3 2 6 6 C 1.37821 * 121.05665 * 359.65043 * 5 4 3 7 7 C 1.39613 * 119.23938 * 0.02759 * 6 5 4 8 8 N 1.39141 * 120.87162 * 179.97438 * 7 6 5 9 9 C 1.36826 * 120.00243 * 0.02562 * 8 7 6 10 10 H 1.08002 * 119.99548 * 0.02562 * 9 8 7 11 11 C 1.38791 * 119.99994 * 179.97438 * 9 8 7 12 12 N 1.31585 * 120.00300 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99793 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47016 * 60.00224 * 13 11 9 15 15 H 1.48503 * 109.47396 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47388 * 300.00464 * 13 11 9 17 17 C 1.39184 * 119.68551 * 180.02562 * 3 2 1 18 18 N 1.40114 * 120.55326 * 359.97438 * 17 3 2 19 19 H 1.09000 * 109.47734 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46535 * 299.99875 * 1 2 3 21 21 H 1.09001 * 109.47139 * 59.99173 * 1 2 3 22 22 H 1.07995 * 119.47341 * 179.67545 * 5 4 3 23 23 H 1.08001 * 120.38203 * 180.02562 * 6 5 4 24 24 H 0.97003 * 120.00013 * 180.02562 * 8 7 6 25 25 H 0.96998 * 120.00137 * 180.02562 * 12 11 9 26 26 H 0.97001 * 120.00238 * 179.72798 * 18 17 3 27 27 H 0.97005 * 120.00038 * 359.44678 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 7 1.3190 2.3153 0.0064 5 6 1.8724 3.5148 0.0005 6 6 3.2423 3.6659 -0.0055 7 6 4.0537 2.5297 -0.0058 8 7 5.4404 2.6427 -0.0123 9 6 6.0261 3.8793 -0.0179 10 1 5.4118 4.7677 -0.0169 11 6 7.4094 3.9920 -0.0238 12 7 8.1577 2.9097 -0.0246 13 14 8.2088 5.6803 -0.0322 14 1 7.7929 6.4309 1.1798 15 1 9.6861 5.5285 -0.0383 16 1 7.7831 6.4237 -1.2451 17 6 3.4359 1.2749 -0.0005 18 7 4.2038 0.1029 -0.0005 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3632 0.5139 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 1.2412 4.3911 0.0007 23 1 3.6831 4.6518 -0.0099 24 1 5.9921 1.8449 -0.0129 25 1 9.1245 2.9885 -0.0283 26 1 5.1722 0.1576 -0.0049 27 1 3.7669 -0.7631 0.0079 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183401.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:05 Heat of formation + Delta-G solvation = -19.185900 kcal Electronic energy + Delta-G solvation = -13396.777756 eV Core-core repulsion = 10960.996818 eV Total energy + Delta-G solvation = -2435.780937 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.20808 -38.89516 -36.97885 -35.38279 -33.61017 -30.55591 -29.52254 -27.97997 -26.48990 -23.49218 -22.78851 -20.02902 -19.20306 -18.18047 -17.35900 -16.80922 -16.67355 -16.23453 -15.63303 -15.55301 -14.65168 -14.52702 -14.38826 -13.43583 -13.20090 -13.16402 -12.49865 -12.49197 -12.11473 -11.98850 -11.90806 -11.52131 -10.59482 -10.29564 -8.97877 -8.46247 -7.97277 -5.68827 0.75321 0.90620 1.44796 1.53555 1.54848 2.24276 2.45975 2.98755 3.12111 3.43617 3.51797 3.97037 4.37495 4.56922 4.59795 4.65371 4.88735 4.92143 5.11450 5.40967 5.44250 5.73613 5.93211 6.44156 6.80728 6.86043 7.16166 7.44025 7.47724 7.60716 8.71946 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.060179 B = 0.008142 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.167142 B = 3438.040903 C = 3888.052832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.328 6.328 3 C 0.257 3.743 4 N -0.584 5.584 5 C 0.126 3.874 6 C -0.280 4.280 7 C 0.185 3.815 8 N -0.571 5.571 9 C -0.316 4.316 10 H 0.108 0.892 11 C -0.029 4.029 12 N -0.931 5.931 13 Si 0.999 3.001 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.266 1.266 17 C 0.030 3.970 18 N -0.873 5.873 19 H 0.118 0.882 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.175 0.825 23 H 0.128 0.872 24 H 0.391 0.609 25 H 0.274 0.726 26 H 0.389 0.611 27 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -1.723 0.025 8.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.237 6.237 3 C 0.078 3.922 4 N -0.312 5.312 5 C -0.031 4.031 6 C -0.310 4.310 7 C 0.060 3.940 8 N -0.180 5.180 9 C -0.445 4.445 10 H 0.125 0.875 11 C -0.228 4.228 12 N -0.571 5.571 13 Si 0.822 3.178 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.191 1.191 17 C -0.078 4.078 18 N -0.421 5.421 19 H 0.136 0.864 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.192 0.808 23 H 0.146 0.854 24 H 0.226 0.774 25 H 0.083 0.917 26 H 0.217 0.783 27 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.908 -1.853 0.026 9.099 hybrid contribution 1.830 0.145 -0.001 1.836 sum -7.078 -1.708 0.025 7.281 Atomic orbital electron populations 1.22849 0.76740 1.03654 1.01590 1.86028 1.23554 1.24562 1.89602 1.18843 0.86799 0.85548 1.00977 1.67150 1.39492 0.98338 1.26253 1.22062 0.91789 0.93718 0.95525 1.21247 0.94325 0.97598 1.17805 1.17841 0.85076 0.92267 0.98787 1.40574 1.00956 1.08224 1.68250 1.19975 0.90890 0.85755 1.47918 0.87471 1.26133 0.96520 1.02851 0.97321 1.69764 1.06281 1.30167 1.50845 0.84871 0.76729 0.76886 0.79274 1.19101 1.20885 1.19113 1.17125 0.88744 0.87188 1.14774 1.41670 1.07130 1.04469 1.88857 0.86353 0.93298 0.93298 0.80802 0.85409 0.77416 0.91652 0.78291 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.23 10.38 113.37 1.18 2.41 15 2 O -0.33 -11.53 9.74 -91.25 -0.89 -12.42 15 3 C 0.26 10.46 7.51 84.85 0.64 11.10 15 4 N -0.58 -22.91 9.21 -308.63 -2.84 -25.75 15 5 C 0.13 4.70 11.16 84.55 0.94 5.64 15 6 C -0.28 -11.83 9.36 22.50 0.21 -11.62 15 7 C 0.19 8.56 6.68 38.71 0.26 8.82 15 8 N -0.57 -28.43 5.42 -183.43 -0.99 -29.42 15 9 C -0.32 -16.21 9.57 84.05 0.80 -15.41 15 10 H 0.11 5.22 5.76 -2.91 -0.02 5.20 15 11 C -0.03 -1.49 5.50 84.86 0.47 -1.03 15 12 N -0.93 -49.93 13.05 21.65 0.28 -49.65 15 13 Si 1.00 40.32 29.55 68.60 2.03 42.35 15 14 H -0.27 -10.36 7.11 99.48 0.71 -9.66 15 15 H -0.28 -11.35 7.11 99.48 0.71 -10.64 15 16 H -0.27 -10.37 7.11 99.48 0.71 -9.67 15 17 C 0.03 1.29 6.83 38.44 0.26 1.55 15 18 N -0.87 -32.51 9.09 -50.34 -0.46 -32.97 15 19 H 0.12 2.21 8.14 -2.39 -0.02 2.19 15 20 H 0.05 1.30 8.10 -2.38 -0.02 1.28 15 21 H 0.05 1.30 8.11 -2.39 -0.02 1.28 15 22 H 0.17 5.07 8.06 -2.91 -0.02 5.05 15 23 H 0.13 5.25 6.09 -2.91 -0.02 5.23 15 24 H 0.39 19.76 6.20 -92.71 -0.57 19.19 15 25 H 0.27 13.98 8.31 -92.71 -0.77 13.21 15 26 H 0.39 14.52 7.15 -92.71 -0.66 13.85 15 27 H 0.40 13.14 8.22 -92.70 -0.76 12.38 15 Total: -1.00 -58.61 238.52 1.12 -57.49 By element: Atomic # 1 Polarization: 49.67 SS G_CDS: -0.77 Total: 48.90 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 4.76 Total: 1.47 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -4.01 Total: -137.79 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.89 Total: -12.42 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -58.61 1.12 -57.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183401.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.302 kcal (2) G-P(sol) polarization free energy of solvation -58.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds