Wall clock time and date at job start Sun Mar 29 2020 21:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46959 * 2 1 4 4 C 1.38339 * 119.93045 * 270.01967 * 3 2 1 5 5 C 1.38309 * 120.19386 * 180.02562 * 4 3 2 6 6 C 1.38251 * 120.06585 * 359.95881 * 5 4 3 7 7 F 1.35102 * 120.06740 * 180.30081 * 6 5 4 8 8 C 1.39275 * 119.86548 * 0.02562 * 6 5 4 9 9 N 1.39377 * 120.09809 * 180.02562 * 8 6 5 10 10 C 1.36828 * 120.00046 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00037 * 359.97438 * 10 9 8 12 12 C 1.38780 * 119.99866 * 179.97438 * 10 9 8 13 13 N 1.31606 * 120.00025 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99968 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.46990 * 89.99978 * 14 12 10 16 16 H 1.48501 * 109.46980 * 209.99942 * 14 12 10 17 17 H 1.48496 * 109.46710 * 329.99745 * 14 12 10 18 18 C 1.38067 * 119.93112 * 90.00058 * 3 2 1 19 19 H 1.08997 * 109.47418 * 300.00277 * 1 2 3 20 20 H 1.09008 * 109.47191 * 60.00354 * 1 2 3 21 21 H 1.09003 * 109.46780 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47403 * 240.00188 * 2 1 3 23 23 H 1.08999 * 109.47441 * 119.99668 * 2 1 3 24 24 H 1.08000 * 119.90045 * 359.97438 * 4 3 2 25 25 H 1.07999 * 119.96487 * 179.97438 * 5 4 3 26 26 H 0.97009 * 119.99996 * 0.02562 * 9 8 6 27 27 H 0.97004 * 119.99416 * 179.97438 * 13 12 10 28 28 H 1.07998 * 120.03332 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2620 2.0718 -1.1989 5 6 2.7235 3.3756 -1.2052 6 6 2.9562 4.0338 -0.0120 7 9 3.4012 5.3094 -0.0181 8 6 2.7256 3.3811 1.1966 9 7 2.9581 4.0402 2.4024 10 6 2.7313 3.3969 3.5886 11 1 2.3718 2.3785 3.5904 12 6 2.9634 4.0530 4.7892 13 7 3.4020 5.2938 4.7870 14 14 2.6531 3.1750 6.4086 15 1 3.8909 2.4757 6.8376 16 1 2.2613 4.1666 7.4422 17 1 1.5605 2.1847 6.2332 18 6 2.2619 2.0704 1.1965 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.0812 1.5600 -2.1326 25 1 2.9019 3.8801 -2.1433 26 1 3.2807 4.9550 2.4008 27 1 3.5639 5.7525 5.6263 28 1 2.0822 1.5606 2.1315 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187471.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:54 Heat of formation + Delta-G solvation = -37.157292 kcal Electronic energy + Delta-G solvation = -13247.945503 eV Core-core repulsion = 10791.465306 eV Total energy + Delta-G solvation = -2456.480197 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.69436 -38.40451 -35.47580 -33.11600 -31.79833 -28.64958 -27.78189 -24.82303 -23.15847 -21.42536 -20.05337 -17.86131 -16.71307 -15.83014 -15.26888 -14.57431 -14.49585 -13.97228 -13.58969 -13.42894 -12.87411 -12.72585 -12.02975 -11.95930 -11.73721 -11.67558 -11.09835 -10.71922 -10.59623 -10.53209 -10.29659 -10.12789 -9.86774 -8.80790 -7.75101 -6.75441 -6.62641 -3.80180 2.21857 2.44380 3.12557 3.13061 3.16490 3.99044 4.50868 5.09073 5.10663 5.37472 5.43754 5.45701 5.73264 5.78452 6.02892 6.12421 6.21226 6.28985 6.41999 6.55325 6.89784 6.95853 7.09566 7.24694 7.38134 7.53433 7.65999 8.03829 8.67513 9.24521 9.44710 10.53463 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.010483 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.033071 B = 2670.280525 C = 3568.068270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.034 4.034 4 C -0.226 4.226 5 C -0.088 4.088 6 C -0.047 4.047 7 F -0.161 7.161 8 C 0.184 3.816 9 N -0.552 5.552 10 C -0.302 4.302 11 H 0.104 0.896 12 C 0.020 3.980 13 N -0.887 5.887 14 Si 0.934 3.066 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.204 4.204 19 H 0.056 0.944 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.403 0.597 27 H 0.276 0.724 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 -6.700 -5.741 9.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.035 4.035 4 C -0.249 4.249 5 C -0.107 4.107 6 C -0.073 4.073 7 F -0.140 7.140 8 C 0.062 3.938 9 N -0.153 5.153 10 C -0.432 4.432 11 H 0.122 0.878 12 C -0.184 4.184 13 N -0.523 5.523 14 Si 0.761 3.239 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.192 1.192 18 C -0.229 4.229 19 H 0.075 0.925 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.123 0.877 25 H 0.130 0.870 26 H 0.239 0.761 27 H 0.086 0.914 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.899 -6.498 -5.208 8.817 hybrid contribution 0.153 0.407 0.834 0.941 sum -2.745 -6.091 -4.374 7.985 Atomic orbital electron populations 1.21719 0.95381 1.00702 1.02288 1.20461 0.95698 0.93758 1.01822 1.19401 0.96637 0.94665 0.92835 1.19997 1.13162 0.95239 0.96506 1.20493 0.99806 0.95275 0.95163 1.16949 1.15933 0.80926 0.93445 1.91329 1.88461 1.36862 1.97337 1.17814 0.98036 0.92860 0.85138 1.40966 1.57913 1.14588 1.01806 1.19755 1.41716 0.99196 0.82539 0.87796 1.25358 0.97035 0.95909 1.00058 1.69713 1.43205 1.10646 1.28771 0.85784 0.78932 0.78800 0.80427 1.20110 1.20605 1.19210 1.20121 1.11463 0.93822 0.97467 0.92462 0.92757 0.93248 0.91810 0.91627 0.87680 0.87016 0.76124 0.91363 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.53 15 2 C -0.08 -1.17 6.06 -27.88 -0.17 -1.34 15 3 C -0.03 -0.63 5.13 -104.64 -0.54 -1.16 15 4 C -0.23 -4.09 9.70 -39.52 -0.38 -4.48 15 5 C -0.09 -1.70 10.02 -39.55 -0.40 -2.10 15 6 C -0.05 -1.06 7.32 -39.19 -0.29 -1.34 15 7 F -0.16 -3.70 16.64 2.25 0.04 -3.66 15 8 C 0.18 4.38 6.63 -83.75 -0.55 3.83 15 9 N -0.55 -14.31 5.43 -9.56 -0.05 -14.36 15 10 C -0.30 -7.89 9.56 -15.12 -0.14 -8.04 15 11 H 0.10 2.57 5.68 -52.49 -0.30 2.27 15 12 C 0.02 0.52 5.50 -17.45 -0.10 0.43 15 13 N -0.89 -24.19 13.05 55.49 0.72 -23.47 15 14 Si 0.93 19.84 29.55 -169.99 -5.02 14.82 15 15 H -0.28 -5.79 7.11 56.52 0.40 -5.38 15 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 17 H -0.27 -5.51 7.11 56.52 0.40 -5.10 15 18 C -0.20 -4.38 8.95 -39.35 -0.35 -4.73 15 19 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.05 0.70 8.14 -51.92 -0.42 0.28 15 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.06 0.83 8.08 -51.93 -0.42 0.41 15 23 H 0.07 0.93 8.08 -51.93 -0.42 0.51 15 24 H 0.11 1.62 8.06 -52.49 -0.42 1.20 15 25 H 0.11 1.88 8.06 -52.49 -0.42 1.45 15 26 H 0.40 10.91 7.37 -40.82 -0.30 10.60 15 27 H 0.28 7.07 8.31 -40.82 -0.34 6.73 15 28 H 0.12 2.58 5.96 -52.49 -0.31 2.26 15 LS Contribution 248.80 15.07 3.75 3.75 Total: -1.00 -27.07 248.80 -6.12 -33.19 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -3.00 Total: 10.20 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.55 Total: -20.46 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.67 Total: -37.83 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.07 -6.12 -33.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187471.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.968 kcal (2) G-P(sol) polarization free energy of solvation -27.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds