Wall clock time and date at job start Sun Mar 29 2020 21:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46959 * 2 1 4 4 C 1.38339 * 119.93045 * 270.01967 * 3 2 1 5 5 C 1.38309 * 120.19386 * 180.02562 * 4 3 2 6 6 C 1.38251 * 120.06585 * 359.95881 * 5 4 3 7 7 F 1.35102 * 120.06740 * 180.30081 * 6 5 4 8 8 C 1.39275 * 119.86548 * 0.02562 * 6 5 4 9 9 N 1.39377 * 120.09809 * 180.02562 * 8 6 5 10 10 C 1.36828 * 120.00046 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00037 * 359.97438 * 10 9 8 12 12 C 1.38780 * 119.99866 * 179.97438 * 10 9 8 13 13 N 1.31606 * 120.00025 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99968 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.46990 * 89.99978 * 14 12 10 16 16 H 1.48501 * 109.46980 * 209.99942 * 14 12 10 17 17 H 1.48496 * 109.46710 * 329.99745 * 14 12 10 18 18 C 1.38067 * 119.93112 * 90.00058 * 3 2 1 19 19 H 1.08997 * 109.47418 * 300.00277 * 1 2 3 20 20 H 1.09008 * 109.47191 * 60.00354 * 1 2 3 21 21 H 1.09003 * 109.46780 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47403 * 240.00188 * 2 1 3 23 23 H 1.08999 * 109.47441 * 119.99668 * 2 1 3 24 24 H 1.08000 * 119.90045 * 359.97438 * 4 3 2 25 25 H 1.07999 * 119.96487 * 179.97438 * 5 4 3 26 26 H 0.97009 * 119.99996 * 0.02562 * 9 8 6 27 27 H 0.97004 * 119.99416 * 179.97438 * 13 12 10 28 28 H 1.07998 * 120.03332 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2620 2.0718 -1.1989 5 6 2.7235 3.3756 -1.2052 6 6 2.9562 4.0338 -0.0120 7 9 3.4012 5.3094 -0.0181 8 6 2.7256 3.3811 1.1966 9 7 2.9581 4.0402 2.4024 10 6 2.7313 3.3969 3.5886 11 1 2.3718 2.3785 3.5904 12 6 2.9634 4.0530 4.7892 13 7 3.4020 5.2938 4.7870 14 14 2.6531 3.1750 6.4086 15 1 3.8909 2.4757 6.8376 16 1 2.2613 4.1666 7.4422 17 1 1.5605 2.1847 6.2332 18 6 2.2619 2.0704 1.1965 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.0812 1.5600 -2.1326 25 1 2.9019 3.8801 -2.1433 26 1 3.2807 4.9550 2.4008 27 1 3.5639 5.7525 5.6263 28 1 2.0822 1.5606 2.1315 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187471.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:54 Heat of formation + Delta-G solvation = -52.037085 kcal Electronic energy + Delta-G solvation = -13248.590739 eV Core-core repulsion = 10791.465306 eV Total energy + Delta-G solvation = -2457.125433 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.47760 -40.06167 -37.18544 -34.58370 -33.53882 -30.23549 -29.40680 -26.65364 -24.50948 -23.08377 -21.59237 -19.70325 -18.44102 -17.50665 -17.02669 -16.33161 -16.14744 -15.51052 -15.20244 -14.82223 -14.48294 -14.12835 -13.60530 -13.59901 -13.48163 -13.05913 -12.69718 -12.39880 -12.13200 -11.91133 -11.74571 -11.70551 -11.45503 -10.63538 -9.37146 -8.55022 -8.50637 -5.77503 0.56487 0.80498 1.39519 1.47326 1.53280 2.25032 2.81560 3.25912 3.31387 3.73533 4.06843 4.10081 4.41195 4.63123 4.68813 4.75212 4.85411 5.04688 5.16427 5.23031 5.34014 5.36644 5.49830 5.55737 5.72227 5.77664 6.00876 6.38925 6.75230 7.40585 7.53799 8.68184 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.010483 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.033071 B = 2670.280525 C = 3568.068270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.029 4.029 4 C -0.202 4.202 5 C -0.085 4.085 6 C -0.074 4.074 7 F -0.171 7.171 8 C 0.164 3.836 9 N -0.586 5.586 10 C -0.320 4.320 11 H 0.110 0.890 12 C -0.035 4.035 13 N -0.935 5.935 14 Si 1.004 2.996 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.256 1.256 18 C -0.216 4.216 19 H 0.038 0.962 20 H 0.058 0.942 21 H 0.076 0.924 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.149 0.851 25 H 0.143 0.857 26 H 0.389 0.611 27 H 0.275 0.725 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 -9.325 -7.671 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.031 4.031 4 C -0.224 4.224 5 C -0.105 4.105 6 C -0.100 4.100 7 F -0.150 7.150 8 C 0.046 3.954 9 N -0.191 5.191 10 C -0.449 4.449 11 H 0.127 0.873 12 C -0.233 4.233 13 N -0.574 5.574 14 Si 0.826 3.174 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.180 1.180 18 C -0.241 4.241 19 H 0.058 0.942 20 H 0.077 0.923 21 H 0.095 0.905 22 H 0.111 0.889 23 H 0.087 0.913 24 H 0.167 0.833 25 H 0.161 0.839 26 H 0.222 0.778 27 H 0.084 0.916 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.863 -9.179 -7.207 12.293 hybrid contribution 0.397 1.074 1.051 1.555 sum -3.467 -8.104 -6.156 10.752 Atomic orbital electron populations 1.21704 0.94106 1.02383 1.01671 1.20572 0.96641 0.90999 1.03466 1.19927 0.94731 0.96625 0.91788 1.20604 1.09360 0.94403 0.98046 1.20941 0.98480 0.95868 0.95163 1.17427 1.17149 0.81026 0.94373 1.91298 1.88734 1.37579 1.97407 1.18359 0.97963 0.93876 0.85191 1.40936 1.61340 1.14333 1.02491 1.20061 1.42055 0.99547 0.83217 0.87272 1.26300 0.97078 0.96603 1.03300 1.69840 1.45919 1.12364 1.29279 0.84749 0.79036 0.77665 0.75910 1.19646 1.20630 1.17990 1.20341 1.11712 0.93190 0.98837 0.94231 0.92263 0.90518 0.88942 0.91333 0.83322 0.83878 0.77769 0.91583 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.89 71.98 0.71 -2.44 15 2 C -0.08 -1.98 6.06 29.85 0.18 -1.80 15 3 C -0.03 -0.99 5.13 -19.88 -0.10 -1.10 15 4 C -0.20 -6.36 9.70 22.31 0.22 -6.15 15 5 C -0.09 -3.04 10.02 22.29 0.22 -2.82 15 6 C -0.07 -3.33 7.32 22.52 0.16 -3.17 15 7 F -0.17 -8.04 16.64 44.97 0.75 -7.29 15 8 C 0.16 7.94 6.63 38.38 0.25 8.19 15 9 N -0.59 -31.96 5.43 -184.15 -1.00 -32.96 15 10 C -0.32 -17.37 9.56 84.04 0.80 -16.57 15 11 H 0.11 5.56 5.68 -2.91 -0.02 5.55 15 12 C -0.03 -1.86 5.50 84.86 0.47 -1.39 15 13 N -0.93 -53.64 13.05 21.64 0.28 -53.35 15 14 Si 1.00 41.76 29.55 68.60 2.03 43.78 15 15 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 16 H -0.28 -11.53 7.11 99.48 0.71 -10.83 15 17 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 18 C -0.22 -9.14 8.95 22.42 0.20 -8.94 15 19 H 0.04 1.01 8.14 -2.39 -0.02 1.00 15 20 H 0.06 1.26 8.14 -2.38 -0.02 1.24 15 21 H 0.08 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.09 1.84 8.08 -2.39 -0.02 1.82 15 23 H 0.07 1.70 8.08 -2.39 -0.02 1.68 15 24 H 0.15 3.51 8.06 -2.91 -0.02 3.49 15 25 H 0.14 4.20 8.06 -2.91 -0.02 4.18 15 26 H 0.39 22.52 7.37 -92.70 -0.68 21.84 15 27 H 0.28 14.80 8.31 -92.70 -0.77 14.03 15 28 H 0.12 4.94 5.96 -2.91 -0.02 4.92 15 Total: -1.00 -60.95 248.80 5.67 -55.28 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.49 Total: 30.72 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 3.12 Total: -36.18 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -0.72 Total: -86.31 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.75 Total: -7.29 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -60.95 5.67 -55.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187471.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.245 kcal (2) G-P(sol) polarization free energy of solvation -60.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds