Wall clock time and date at job start Sun Mar 29 2020 21:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 116.99932 * 2 1 4 4 C 1.39049 * 120.01616 * 180.02562 * 3 2 1 5 5 N 1.32108 * 120.11342 * 179.97438 * 4 3 2 6 6 C 1.32031 * 120.14844 * 359.66394 * 5 4 3 7 7 C 1.39232 * 120.03263 * 0.60967 * 6 5 4 8 8 N 1.38816 * 120.05666 * 179.68972 * 7 6 5 9 9 C 1.46494 * 120.00252 * 184.72728 * 8 7 6 10 10 C 1.36898 * 119.99707 * 4.72476 * 8 7 6 11 11 H 1.08001 * 120.00156 * 334.62508 * 10 8 7 12 12 C 1.38818 * 119.99923 * 154.63566 * 10 8 7 13 13 N 1.31566 * 119.99809 * 348.62755 * 12 10 8 14 14 Si 1.86797 * 120.00407 * 168.91262 * 12 10 8 15 15 H 1.48501 * 109.46969 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47324 * 119.99164 * 14 12 10 17 17 H 1.48497 * 109.47233 * 239.99908 * 14 12 10 18 18 N 1.32517 * 120.01498 * 359.97438 * 3 2 1 19 19 H 1.09001 * 109.47125 * 300.00541 * 1 2 3 20 20 H 1.09007 * 109.46975 * 60.00414 * 1 2 3 21 21 H 1.09003 * 109.46878 * 180.02562 * 1 2 3 22 22 H 1.07997 * 119.94835 * 359.97366 * 4 3 2 23 23 H 1.08001 * 119.98286 * 180.30023 * 6 5 4 24 24 H 1.08996 * 109.47206 * 270.96256 * 9 8 7 25 25 H 1.09003 * 109.46787 * 30.96119 * 9 8 7 26 26 H 1.08999 * 109.47427 * 150.95352 * 9 8 7 27 27 H 0.97003 * 119.99708 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4335 1.2821 -0.0005 5 7 4.0352 2.4581 -0.0011 6 6 3.3209 3.5685 -0.0077 7 6 1.9302 3.5024 -0.0015 8 7 1.1787 4.6696 -0.0020 9 6 -0.2805 4.6014 0.1091 10 6 1.8012 5.8844 -0.1063 11 1 2.8263 5.9952 0.2150 12 6 1.1146 6.9738 -0.6249 13 7 -0.0456 6.7977 -1.2197 14 14 1.8418 8.6887 -0.4854 15 1 3.1485 8.6167 0.2165 16 1 2.0399 9.2545 -1.8440 17 1 0.9151 9.5584 0.2828 18 7 1.3235 2.3205 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 4.0211 0.3760 -0.0005 23 1 3.8156 4.5285 -0.0131 24 1 -0.7171 4.5180 -0.8860 25 1 -0.5593 3.7304 0.7024 26 1 -0.6506 5.5047 0.5940 27 1 -0.5252 7.5589 -1.5824 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:56 Heat of formation + Delta-G solvation = 7.532089 kcal Electronic energy + Delta-G solvation = -13595.273424 eV Core-core repulsion = 11160.651065 eV Total energy + Delta-G solvation = -2434.622358 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.77316 -39.38739 -37.91780 -34.69692 -33.45747 -30.92636 -28.94884 -27.86492 -26.29058 -24.20787 -23.25479 -20.01380 -18.77955 -18.29591 -17.50923 -17.07800 -16.96880 -15.99949 -15.49839 -15.47472 -14.98914 -14.28893 -13.77568 -13.36617 -13.19609 -12.84615 -12.70401 -12.46015 -12.36171 -12.05618 -12.01519 -11.93695 -11.07720 -10.20462 -9.94018 -8.76752 -8.39803 -5.97491 0.40952 0.61947 1.45278 1.47611 1.59569 2.10697 2.24396 2.74529 2.81011 3.22558 3.74973 3.91439 4.07829 4.44739 4.48618 4.58204 4.74368 4.80524 4.87571 4.88674 5.20087 5.31696 5.45066 5.75765 6.21053 6.45004 6.68730 7.09509 7.22500 7.60108 8.56745 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.048885 B = 0.009403 C = 0.008041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.638030 B = 2976.941795 C = 3481.453523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.309 6.309 3 C 0.322 3.678 4 C -0.105 4.105 5 N -0.383 5.383 6 C -0.078 4.078 7 C 0.335 3.665 8 N -0.420 5.420 9 C 0.144 3.856 10 C -0.339 4.339 11 H 0.109 0.891 12 C -0.005 4.005 13 N -0.894 5.894 14 Si 1.003 2.997 15 H -0.255 1.255 16 H -0.278 1.278 17 H -0.273 1.273 18 N -0.599 5.599 19 H 0.049 0.951 20 H 0.045 0.955 21 H 0.132 0.868 22 H 0.180 0.820 23 H 0.161 0.839 24 H 0.036 0.964 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -4.998 2.247 5.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.214 6.214 3 C 0.135 3.865 4 C -0.267 4.267 5 N -0.096 5.096 6 C -0.250 4.250 7 C 0.091 3.909 8 N -0.109 5.109 9 C 0.001 3.999 10 C -0.467 4.467 11 H 0.127 0.873 12 C -0.208 4.208 13 N -0.529 5.529 14 Si 0.825 3.175 15 H -0.178 1.178 16 H -0.204 1.204 17 H -0.198 1.198 18 N -0.341 5.341 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.150 0.850 22 H 0.197 0.803 23 H 0.178 0.822 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.399 -4.886 2.151 5.353 hybrid contribution -0.449 0.942 -0.178 1.059 sum -0.847 -3.943 1.973 4.490 Atomic orbital electron populations 1.22998 0.76495 1.04521 1.01598 1.86212 1.23892 1.23617 1.87714 1.20799 0.90819 0.84609 0.90261 1.22281 0.89282 0.97047 1.18134 1.68012 1.38523 0.98013 1.05077 1.22612 0.89978 0.97751 1.14691 1.19299 0.90133 0.85876 0.95584 1.42757 1.05682 1.01827 1.60682 1.21153 0.79663 0.99271 0.99823 1.20093 1.00430 0.84624 1.41518 0.87326 1.26381 0.96475 1.04268 0.93695 1.70188 1.15493 1.33293 1.33887 0.84709 0.78875 0.75683 0.78199 1.17849 1.20366 1.19843 1.67375 1.39801 0.97620 1.29338 0.93243 0.93632 0.85006 0.80303 0.82190 0.94521 0.93395 0.92337 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.08 10.39 113.37 1.18 2.26 15 2 O -0.31 -10.65 10.49 -89.93 -0.94 -11.59 15 3 C 0.32 13.19 7.49 84.78 0.64 13.83 15 4 C -0.10 -4.17 11.17 84.85 0.95 -3.22 15 5 N -0.38 -16.62 10.48 -194.09 -2.03 -18.66 15 6 C -0.08 -3.62 10.46 84.90 0.89 -2.73 15 7 C 0.33 16.28 7.33 133.01 0.97 17.26 15 8 N -0.42 -21.22 3.11 -540.98 -1.68 -22.91 15 9 C 0.14 6.88 8.67 127.77 1.11 7.99 15 10 C -0.34 -16.98 9.03 84.04 0.76 -16.22 15 11 H 0.11 5.18 6.11 -2.91 -0.02 5.16 15 12 C 0.00 -0.22 5.08 84.87 0.43 0.21 15 13 N -0.89 -45.67 10.80 21.65 0.23 -45.44 15 14 Si 1.00 38.16 29.57 68.60 2.03 40.19 15 15 H -0.26 -9.24 7.11 99.48 0.71 -8.54 15 16 H -0.28 -10.53 7.11 99.48 0.71 -9.83 15 17 H -0.27 -10.13 7.11 99.48 0.71 -9.43 15 18 N -0.60 -27.27 8.24 -305.58 -2.52 -29.79 15 19 H 0.05 1.42 8.11 -2.39 -0.02 1.40 15 20 H 0.04 1.36 8.11 -2.38 -0.02 1.34 15 21 H 0.13 2.47 8.14 -2.39 -0.02 2.45 15 22 H 0.18 5.84 8.06 -2.91 -0.02 5.81 15 23 H 0.16 7.14 6.13 -2.91 -0.02 7.12 15 24 H 0.04 1.84 7.64 -2.39 -0.02 1.83 15 25 H 0.05 2.11 7.50 -2.39 -0.02 2.09 15 26 H 0.06 2.82 7.05 -2.39 -0.02 2.80 15 27 H 0.28 13.21 8.31 -92.71 -0.77 12.44 15 Total: -1.00 -57.35 238.79 3.18 -54.16 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.18 Total: 14.66 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 6.92 Total: 19.37 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -6.00 Total: -116.79 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.94 Total: -11.59 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -57.35 3.18 -54.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.694 kcal (2) G-P(sol) polarization free energy of solvation -57.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds