Wall clock time and date at job start Sun Mar 29 2020 21:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35515 * 117.00105 * 2 1 4 4 C 1.39488 * 120.46904 * 179.97438 * 3 2 1 5 5 C 1.38249 * 118.50663 * 179.74226 * 4 3 2 6 6 N 1.32417 * 119.26823 * 0.25854 * 5 4 3 7 7 C 1.32505 * 120.88805 * 359.97438 * 6 5 4 8 8 N 1.38432 * 119.18167 * 179.97438 * 7 6 5 9 9 C 1.46502 * 119.99635 * 180.02562 * 8 7 6 10 10 C 1.36991 * 120.00528 * 359.97438 * 8 7 6 11 11 H 1.08003 * 119.99273 * 22.49134 * 10 8 7 12 12 C 1.38824 * 120.00400 * 202.49237 * 10 8 7 13 13 N 1.31542 * 120.00084 * 11.07882 * 12 10 8 14 14 Si 1.86801 * 120.00127 * 191.08363 * 12 10 8 15 15 H 1.48497 * 109.47139 * 59.99915 * 14 12 10 16 16 H 1.48498 * 109.46973 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46791 * 299.99834 * 14 12 10 18 18 N 1.32526 * 121.63150 * 0.02562 * 7 6 5 19 19 H 1.09007 * 109.46737 * 59.99849 * 1 2 3 20 20 H 1.08992 * 109.47040 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47380 * 300.00561 * 1 2 3 22 22 H 1.08006 * 120.74119 * 0.02562 * 4 3 2 23 23 H 1.07999 * 120.36372 * 180.22630 * 5 4 3 24 24 H 1.09002 * 109.47530 * 93.89759 * 9 8 7 25 25 H 1.09005 * 109.46858 * 213.90282 * 9 8 7 26 26 H 1.09001 * 109.47204 * 333.89276 * 9 8 7 27 27 H 0.97004 * 120.00440 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4366 1.2918 0.0005 5 6 4.0217 2.5444 -0.0049 6 7 3.2491 3.6198 -0.0053 7 6 1.9287 3.5088 -0.0010 8 7 1.1549 4.6567 -0.0010 9 6 -0.3065 4.5547 0.0043 10 6 1.7556 5.8878 -0.0049 11 1 2.7681 5.9934 -0.3656 12 6 1.0630 6.9997 0.4549 13 7 -0.0775 6.8469 1.0923 14 14 1.7505 8.7127 0.1683 15 1 1.8875 8.9534 -1.2906 16 1 0.8289 9.7200 0.7524 17 1 3.0820 8.8264 0.8160 18 7 1.3307 2.3262 0.0043 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 4.0438 0.3986 0.0005 23 1 5.0970 2.6446 -0.0084 24 1 -0.6704 4.6015 1.0308 25 1 -0.7303 5.3791 -0.5694 26 1 -0.6064 3.6078 -0.4447 27 1 -0.5613 7.6237 1.4139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800857.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:59 Heat of formation + Delta-G solvation = 34.580280 kcal Electronic energy + Delta-G solvation = -13597.367860 eV Core-core repulsion = 11163.918400 eV Total energy + Delta-G solvation = -2433.449461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.94647 -37.82141 -35.85704 -32.31625 -31.67628 -29.64966 -27.12470 -26.31838 -24.43994 -22.53382 -21.34781 -18.34575 -16.94809 -16.55113 -15.51641 -15.39991 -14.31840 -14.29636 -14.10346 -13.82849 -13.18834 -12.79666 -12.37980 -11.57874 -11.45926 -11.23634 -10.98643 -10.87008 -10.50297 -10.43456 -9.70565 -9.59074 -9.14407 -8.54976 -8.03723 -7.14440 -6.45661 -3.88032 2.27598 2.39427 3.16641 3.17951 3.19864 3.64551 3.94862 4.47888 4.73469 5.20648 5.30255 5.58098 5.68884 5.79201 6.03362 6.08545 6.25464 6.54389 6.59767 6.87936 7.17244 7.23321 7.44086 7.62361 7.97424 8.28449 8.45387 9.05167 9.25880 9.79135 10.54087 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.049315 B = 0.009424 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.639990 B = 2970.461170 C = 3476.964952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.315 6.315 3 C 0.397 3.603 4 C -0.376 4.376 5 C 0.213 3.787 6 N -0.585 5.585 7 C 0.524 3.476 8 N -0.390 5.390 9 C 0.131 3.869 10 C -0.288 4.288 11 H 0.110 0.890 12 C 0.026 3.974 13 N -0.873 5.873 14 Si 0.938 3.062 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.270 1.270 18 N -0.644 5.644 19 H 0.055 0.945 20 H 0.086 0.914 21 H 0.056 0.944 22 H 0.124 0.876 23 H 0.153 0.847 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -6.254 -1.863 6.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.220 6.220 3 C 0.205 3.795 4 C -0.407 4.407 5 C 0.041 3.959 6 N -0.312 5.312 7 C 0.171 3.829 8 N -0.081 5.081 9 C -0.012 4.012 10 C -0.417 4.417 11 H 0.128 0.872 12 C -0.179 4.179 13 N -0.509 5.509 14 Si 0.764 3.236 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.195 1.195 18 N -0.387 5.387 19 H 0.073 0.927 20 H 0.105 0.895 21 H 0.075 0.925 22 H 0.142 0.858 23 H 0.170 0.830 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.062 -5.205 -1.759 5.495 hybrid contribution 0.418 0.100 0.027 0.431 sum 0.356 -5.106 -1.732 5.403 Atomic orbital electron populations 1.22716 0.78315 1.01737 1.02481 1.86161 1.22187 1.25706 1.87978 1.19608 0.89067 0.83755 0.87098 1.20923 0.91973 0.99760 1.28094 1.22418 0.99005 0.86703 0.87761 1.67919 1.04516 1.32725 1.26040 1.18849 0.85335 0.84637 0.94030 1.42376 1.04566 1.01374 1.59779 1.21446 0.78823 0.98891 1.02089 1.19879 1.01156 0.81492 1.39217 0.87231 1.25510 0.96384 1.00774 0.95241 1.70094 1.15186 1.31485 1.34150 0.85799 0.78785 0.80114 0.78893 1.19678 1.20817 1.19473 1.67284 1.40724 0.97877 1.32799 0.92667 0.89533 0.92532 0.85796 0.83012 0.92173 0.91648 0.93941 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.41 101.05 1.05 1.70 15 2 O -0.32 -5.85 10.49 -18.24 -0.19 -6.04 15 3 C 0.40 8.44 7.53 -16.71 -0.13 8.32 15 4 C -0.38 -7.34 10.12 -39.11 -0.40 -7.73 15 5 C 0.21 4.26 11.29 -17.30 -0.20 4.07 15 6 N -0.59 -14.28 9.22 -13.97 -0.13 -14.41 15 7 C 0.52 13.47 8.13 -322.71 -2.62 10.84 15 8 N -0.39 -10.38 3.11 -124.45 -0.39 -10.76 15 9 C 0.13 3.19 8.72 59.85 0.52 3.71 15 10 C -0.29 -7.80 9.29 -15.03 -0.14 -7.94 15 11 H 0.11 2.99 7.32 -52.48 -0.38 2.60 15 12 C 0.03 0.67 5.13 -17.46 -0.09 0.58 15 13 N -0.87 -23.06 10.58 55.49 0.59 -22.47 15 14 Si 0.94 20.08 29.57 -169.99 -5.03 15.06 15 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 18 N -0.64 -15.20 7.99 -13.95 -0.11 -15.31 15 19 H 0.05 0.85 8.12 -51.93 -0.42 0.43 15 20 H 0.09 0.98 8.14 -51.93 -0.42 0.55 15 21 H 0.06 0.89 8.12 -51.93 -0.42 0.47 15 22 H 0.12 2.05 8.06 -52.48 -0.42 1.63 15 23 H 0.15 2.36 8.06 -52.49 -0.42 1.94 15 24 H 0.06 1.53 7.44 -51.93 -0.39 1.14 15 25 H 0.06 1.60 7.17 -51.93 -0.37 1.23 15 26 H 0.04 0.95 7.21 -51.93 -0.37 0.58 15 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 LS Contribution 240.84 15.07 3.63 3.63 Total: -1.00 -29.59 240.84 -6.39 -35.98 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -2.76 Total: 0.78 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: -2.00 Total: 13.55 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.04 Total: -62.96 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.19 Total: -6.04 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.59 -6.39 -35.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800857.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.558 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds