Wall clock time and date at job start Sun Mar 29 2020 21:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35515 * 117.00105 * 2 1 4 4 C 1.39488 * 120.46904 * 179.97438 * 3 2 1 5 5 C 1.38249 * 118.50663 * 179.74226 * 4 3 2 6 6 N 1.32417 * 119.26823 * 0.25854 * 5 4 3 7 7 C 1.32505 * 120.88805 * 359.97438 * 6 5 4 8 8 N 1.38432 * 119.18167 * 179.97438 * 7 6 5 9 9 C 1.46502 * 119.99635 * 180.02562 * 8 7 6 10 10 C 1.36991 * 120.00528 * 359.97438 * 8 7 6 11 11 H 1.08003 * 119.99273 * 22.49134 * 10 8 7 12 12 C 1.38824 * 120.00400 * 202.49237 * 10 8 7 13 13 N 1.31542 * 120.00084 * 11.07882 * 12 10 8 14 14 Si 1.86801 * 120.00127 * 191.08363 * 12 10 8 15 15 H 1.48497 * 109.47139 * 59.99915 * 14 12 10 16 16 H 1.48498 * 109.46973 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46791 * 299.99834 * 14 12 10 18 18 N 1.32526 * 121.63150 * 0.02562 * 7 6 5 19 19 H 1.09007 * 109.46737 * 59.99849 * 1 2 3 20 20 H 1.08992 * 109.47040 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47380 * 300.00561 * 1 2 3 22 22 H 1.08006 * 120.74119 * 0.02562 * 4 3 2 23 23 H 1.07999 * 120.36372 * 180.22630 * 5 4 3 24 24 H 1.09002 * 109.47530 * 93.89759 * 9 8 7 25 25 H 1.09005 * 109.46858 * 213.90282 * 9 8 7 26 26 H 1.09001 * 109.47204 * 333.89276 * 9 8 7 27 27 H 0.97004 * 120.00440 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4366 1.2918 0.0005 5 6 4.0217 2.5444 -0.0049 6 7 3.2491 3.6198 -0.0053 7 6 1.9287 3.5088 -0.0010 8 7 1.1549 4.6567 -0.0010 9 6 -0.3065 4.5547 0.0043 10 6 1.7556 5.8878 -0.0049 11 1 2.7681 5.9934 -0.3656 12 6 1.0630 6.9997 0.4549 13 7 -0.0775 6.8469 1.0923 14 14 1.7505 8.7127 0.1683 15 1 1.8875 8.9534 -1.2906 16 1 0.8289 9.7200 0.7524 17 1 3.0820 8.8264 0.8160 18 7 1.3307 2.3262 0.0043 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 4.0438 0.3986 0.0005 23 1 5.0970 2.6446 -0.0084 24 1 -0.6704 4.6015 1.0308 25 1 -0.7303 5.3791 -0.5694 26 1 -0.6064 3.6078 -0.4447 27 1 -0.5613 7.6237 1.4139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800857.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:58 Heat of formation + Delta-G solvation = 16.113186 kcal Electronic energy + Delta-G solvation = -13598.168654 eV Core-core repulsion = 11163.918400 eV Total energy + Delta-G solvation = -2434.250254 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.66145 -39.40881 -37.66549 -34.15018 -33.46609 -31.37264 -28.73692 -27.99669 -26.28863 -24.16984 -23.14774 -20.05375 -18.74746 -18.27645 -17.26947 -16.99103 -16.07360 -15.90441 -15.63945 -15.58764 -14.93964 -14.39806 -14.15545 -13.30965 -13.06701 -12.78313 -12.65326 -12.53444 -12.39580 -12.11550 -11.41998 -11.37834 -10.94210 -10.30032 -9.81260 -8.96576 -8.34636 -5.87128 0.57336 0.69398 1.43235 1.50649 1.55028 2.09819 2.27513 2.68873 2.88103 3.39196 3.65315 4.20165 4.37897 4.43641 4.51498 4.66326 4.77034 4.81109 4.91465 4.93878 5.24367 5.42842 5.62688 5.84548 6.22648 6.53935 6.58685 7.16810 7.40159 7.95357 8.65694 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.049315 B = 0.009424 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.639990 B = 2970.461170 C = 3476.964952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.312 6.312 3 C 0.379 3.621 4 C -0.357 4.357 5 C 0.209 3.791 6 N -0.618 5.618 7 C 0.517 3.483 8 N -0.421 5.421 9 C 0.153 3.847 10 C -0.315 4.315 11 H 0.098 0.902 12 C -0.014 4.014 13 N -0.903 5.903 14 Si 1.005 2.995 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.268 1.268 18 N -0.657 5.657 19 H 0.048 0.952 20 H 0.132 0.868 21 H 0.045 0.955 22 H 0.162 0.838 23 H 0.199 0.801 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -7.477 -2.144 8.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.217 6.217 3 C 0.189 3.811 4 C -0.387 4.387 5 C 0.041 3.959 6 N -0.346 5.346 7 C 0.163 3.837 8 N -0.116 5.116 9 C 0.009 3.991 10 C -0.444 4.444 11 H 0.116 0.884 12 C -0.216 4.216 13 N -0.540 5.540 14 Si 0.827 3.173 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.193 1.193 18 N -0.401 5.401 19 H 0.067 0.933 20 H 0.150 0.850 21 H 0.064 0.936 22 H 0.180 0.820 23 H 0.216 0.784 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.185 -6.524 -2.046 6.939 hybrid contribution 0.135 0.142 0.111 0.225 sum 1.319 -6.382 -1.935 6.798 Atomic orbital electron populations 1.22989 0.76442 1.04476 1.01645 1.86180 1.23969 1.23987 1.87540 1.20106 0.90189 0.83967 0.86829 1.21451 0.91656 1.01069 1.24477 1.23256 1.00839 0.85923 0.85921 1.67967 1.04353 1.34910 1.27386 1.19185 0.86097 0.85070 0.93345 1.42489 1.04952 1.01661 1.62526 1.21153 0.78520 0.98827 1.00584 1.19928 1.01214 0.82515 1.40764 0.88386 1.26344 0.96637 1.04006 0.94608 1.70192 1.16276 1.32377 1.35197 0.84814 0.78014 0.75519 0.78928 1.19020 1.20105 1.19329 1.67283 1.41474 0.98065 1.33252 0.93295 0.85013 0.93595 0.81999 0.78412 0.94216 0.92719 0.92882 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.10 10.41 113.37 1.18 2.28 15 2 O -0.31 -10.74 10.49 -88.18 -0.93 -11.66 15 3 C 0.38 15.37 7.53 84.86 0.64 16.01 15 4 C -0.36 -12.68 10.12 22.57 0.23 -12.45 15 5 C 0.21 7.78 11.29 84.61 0.95 8.73 15 6 N -0.62 -29.72 9.22 -198.12 -1.83 -31.55 15 7 C 0.52 26.66 8.13 261.45 2.13 28.79 15 8 N -0.42 -23.01 3.11 -547.66 -1.70 -24.71 15 9 C 0.15 7.69 8.72 127.77 1.11 8.81 15 10 C -0.32 -17.52 9.29 84.03 0.78 -16.74 15 11 H 0.10 5.49 7.32 -2.91 -0.02 5.47 15 12 C -0.01 -0.75 5.13 84.88 0.44 -0.32 15 13 N -0.90 -48.92 10.58 21.65 0.23 -48.69 15 14 Si 1.00 41.60 29.57 68.60 2.03 43.63 15 15 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 16 H -0.28 -10.99 7.11 99.48 0.71 -10.28 15 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 18 N -0.66 -30.72 7.99 -310.79 -2.48 -33.20 15 19 H 0.05 1.44 8.12 -2.38 -0.02 1.42 15 20 H 0.13 2.49 8.14 -2.39 -0.02 2.47 15 21 H 0.05 1.39 8.12 -2.39 -0.02 1.37 15 22 H 0.16 4.52 8.06 -2.91 -0.02 4.49 15 23 H 0.20 5.31 8.06 -2.91 -0.02 5.29 15 24 H 0.04 2.10 7.44 -2.39 -0.02 2.08 15 25 H 0.05 2.78 7.17 -2.38 -0.02 2.77 15 26 H 0.05 2.45 7.21 -2.39 -0.02 2.43 15 27 H 0.27 13.89 8.31 -92.71 -0.77 13.12 15 Total: -1.00 -64.52 240.84 3.95 -60.57 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.17 Total: 10.51 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: 7.46 Total: 35.11 kcal Atomic # 7 Polarization: -132.37 SS G_CDS: -5.79 Total: -138.15 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.93 Total: -11.66 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -64.52 3.95 -60.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800857.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.682 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds