Wall clock time and date at job start Sun Mar 29 2020 21:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35683 * 117.00138 * 2 1 4 4 N 1.32304 * 120.12867 * 359.97438 * 3 2 1 5 5 C 1.32385 * 120.02632 * 179.97438 * 4 3 2 6 6 C 1.38112 * 120.27451 * 0.02562 * 5 4 3 7 7 N 1.32280 * 120.24740 * 359.97438 * 6 5 4 8 8 C 1.32612 * 119.96986 * 0.02562 * 7 6 5 9 9 N 1.38858 * 120.13254 * 179.97438 * 8 7 6 10 10 C 1.46500 * 120.00193 * 174.59613 * 9 8 7 11 11 C 1.36852 * 119.99905 * 354.60222 * 9 8 7 12 12 H 1.07996 * 120.00312 * 29.53578 * 11 9 8 13 13 C 1.38807 * 119.99658 * 209.53627 * 11 9 8 14 14 N 1.31574 * 120.00209 * 16.15041 * 13 11 9 15 15 Si 1.86806 * 119.99961 * 196.15443 * 13 11 9 16 16 H 1.48504 * 109.46844 * 59.99562 * 15 13 11 17 17 H 1.48497 * 109.47154 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46843 * 299.99985 * 15 13 11 19 19 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46813 * 300.00437 * 1 2 3 21 21 H 1.08996 * 109.46697 * 60.00376 * 1 2 3 22 22 H 1.08006 * 119.86569 * 180.02562 * 5 4 3 23 23 H 1.07997 * 119.87938 * 179.69874 * 6 5 4 24 24 H 1.09000 * 109.46918 * 65.28126 * 10 9 8 25 25 H 1.09003 * 109.47053 * 185.27838 * 10 9 8 26 26 H 1.09005 * 109.47291 * 305.27836 * 10 9 8 27 27 H 0.97001 * 119.99458 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 7 1.3270 2.3202 -0.0005 5 6 1.9302 3.4986 0.0000 6 6 3.3092 3.5750 0.0005 7 7 4.0377 2.4709 0.0011 8 6 3.4437 1.2853 0.0005 9 7 4.2051 0.1241 0.0005 10 6 3.5506 -1.1811 0.1195 11 6 5.5671 0.1990 -0.1104 12 1 6.0929 1.0636 0.2667 13 6 6.2726 -0.8364 -0.7077 14 7 5.6398 -1.7260 -1.4421 15 14 8.1208 -0.9670 -0.4689 16 1 8.4237 -1.1139 0.9775 17 1 8.6325 -2.1514 -1.2041 18 1 8.7750 0.2602 -0.9895 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 1.3414 4.4041 0.0000 23 1 3.7946 4.5398 -0.0040 24 1 2.9321 -1.3589 -0.7603 25 1 4.3076 -1.9617 0.1951 26 1 2.9250 -1.1940 1.0121 27 1 6.1330 -2.4493 -1.8598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800879.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:57 Heat of formation + Delta-G solvation = 12.989573 kcal Electronic energy + Delta-G solvation = -13851.286219 eV Core-core repulsion = 11416.900515 eV Total energy + Delta-G solvation = -2434.385704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.76408 -38.91051 -38.08087 -34.49767 -33.56981 -30.69291 -28.90445 -27.69778 -26.21581 -24.23497 -23.31437 -19.55325 -19.04558 -18.22708 -17.96272 -17.06940 -16.44159 -15.63203 -15.33982 -15.16252 -14.93182 -14.29021 -14.19225 -13.36828 -13.13086 -12.76967 -12.67714 -12.36991 -12.17019 -12.10319 -11.93240 -11.69794 -10.98371 -10.28982 -9.79571 -8.58076 -8.23553 -5.82632 0.43694 0.63140 1.43588 1.49636 1.55080 2.22161 2.38044 2.81998 2.87645 3.27112 3.70431 3.95356 4.23583 4.51436 4.53158 4.65848 4.74966 4.79703 4.81921 4.91397 5.29721 5.41272 5.59602 5.90322 6.45307 6.52135 6.80991 7.15174 7.38544 7.71096 8.65080 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.040688 B = 0.011216 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.992671 B = 2495.824936 C = 3094.288855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.166 3.834 4 N -0.468 5.468 5 C -0.063 4.063 6 C 0.077 3.923 7 N -0.529 5.529 8 C 0.300 3.700 9 N -0.428 5.428 10 C 0.141 3.859 11 C -0.320 4.320 12 H 0.091 0.909 13 C -0.012 4.012 14 N -0.896 5.896 15 Si 0.998 3.002 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.270 1.270 19 H 0.116 0.884 20 H 0.052 0.948 21 H 0.047 0.953 22 H 0.190 0.810 23 H 0.192 0.808 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 3.401 2.690 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.225 6.225 3 C -0.028 4.028 4 N -0.197 5.197 5 C -0.221 4.221 6 C -0.084 4.084 7 N -0.257 5.257 8 C 0.056 3.944 9 N -0.121 5.121 10 C -0.002 4.002 11 C -0.449 4.449 12 H 0.108 0.892 13 C -0.214 4.214 14 N -0.532 5.532 15 Si 0.821 3.179 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.195 1.195 19 H 0.134 0.866 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.207 0.793 23 H 0.208 0.792 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.002 2.661 2.571 6.222 hybrid contribution 0.420 -0.004 -0.141 0.443 sum -4.582 2.657 2.430 5.827 Atomic orbital electron populations 1.22914 0.77653 1.03826 1.01460 1.86487 1.23035 1.23331 1.89617 1.20027 0.88640 0.86522 1.07655 1.67678 1.39538 0.98661 1.13827 1.23118 0.93712 0.94807 1.10473 1.23751 0.92599 0.97073 0.94931 1.68088 1.38943 0.97073 1.21612 1.19102 0.86217 0.89163 0.99952 1.42678 1.05293 1.02102 1.62017 1.21393 0.95824 0.84105 0.98836 1.19806 0.80997 1.07005 1.37065 0.89171 1.26318 1.05122 0.96131 0.93847 1.70160 1.38801 1.15560 1.28705 0.84914 0.76176 0.77978 0.78827 1.18992 1.20018 1.19489 0.86551 0.92919 0.93402 0.79270 0.79153 0.94130 0.90609 0.93575 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.40 113.37 1.18 2.31 15 2 O -0.32 -13.35 6.30 -90.01 -0.57 -13.91 15 3 C 0.17 7.64 7.44 85.07 0.63 8.27 15 4 N -0.47 -19.11 9.39 -307.61 -2.89 -22.00 15 5 C -0.06 -2.21 11.21 84.58 0.95 -1.27 15 6 C 0.08 2.88 11.21 84.60 0.95 3.83 15 7 N -0.53 -25.48 9.46 -192.21 -1.82 -27.30 15 8 C 0.30 15.34 7.34 133.28 0.98 16.32 15 9 N -0.43 -23.16 3.08 -540.37 -1.67 -24.82 15 10 C 0.14 6.95 7.77 127.77 0.99 7.95 15 11 C -0.32 -17.76 9.17 84.05 0.77 -16.99 15 12 H 0.09 5.09 7.49 -2.91 -0.02 5.07 15 13 C -0.01 -0.63 4.90 84.87 0.42 -0.21 15 14 N -0.90 -48.58 11.18 21.65 0.24 -48.34 15 15 Si 1.00 41.47 29.58 68.60 2.03 43.50 15 16 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 17 H -0.28 -10.97 7.11 99.48 0.71 -10.26 15 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 19 H 0.12 2.79 8.14 -2.39 -0.02 2.77 15 20 H 0.05 1.55 8.11 -2.39 -0.02 1.53 15 21 H 0.05 1.46 8.11 -2.39 -0.02 1.45 15 22 H 0.19 4.81 8.06 -2.91 -0.02 4.78 15 23 H 0.19 5.24 8.06 -2.91 -0.02 5.21 15 24 H 0.04 2.03 7.14 -2.39 -0.02 2.01 15 25 H 0.08 3.87 5.98 -2.39 -0.01 3.85 15 26 H 0.05 2.07 7.14 -2.38 -0.02 2.06 15 27 H 0.27 13.92 8.31 -92.71 -0.77 13.15 15 Total: -1.00 -64.68 236.29 3.37 -61.31 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.18 Total: 11.34 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 6.87 Total: 20.21 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -6.13 Total: -122.46 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.57 Total: -13.91 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -64.68 3.37 -61.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800879.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.304 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds