Wall clock time and date at job start Sun Mar 29 2020 21:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 119.99676 * 2 1 4 4 H 1.08005 * 120.00135 * 201.93500 * 3 2 1 5 5 C 1.38814 * 120.00450 * 21.93165 * 3 2 1 6 6 N 1.31624 * 119.99502 * 12.93845 * 5 3 2 7 7 Si 1.86794 * 120.00461 * 192.93180 * 5 3 2 8 8 H 1.48502 * 109.47208 * 60.00202 * 7 5 3 9 9 H 1.48500 * 109.47413 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47293 * 300.00577 * 7 5 3 11 11 C 1.46499 * 120.00391 * 179.97438 * 2 1 3 12 12 C 1.53301 * 109.50381 * 300.21384 * 11 2 1 13 13 C 1.53795 * 108.58523 * 170.91232 * 12 11 2 14 14 H 1.09004 * 112.20779 * 171.11424 * 13 12 11 15 15 C 1.51846 * 108.16733 * 46.16151 * 13 12 11 16 16 C 1.31552 * 107.67131 * 270.84037 * 15 13 12 17 17 C 1.51848 * 107.66874 * 359.61744 * 16 15 13 18 18 H 1.09007 * 112.30647 * 213.96942 * 17 16 15 19 19 C 1.53300 * 109.50369 * 60.00348 * 11 2 1 20 20 O 1.44909 * 107.06264 * 294.80853 * 13 12 11 21 21 H 1.08992 * 109.47345 * 274.33781 * 1 2 3 22 22 H 1.08993 * 109.47132 * 34.34894 * 1 2 3 23 23 H 1.09003 * 109.46300 * 154.34230 * 1 2 3 24 24 H 0.97002 * 119.99563 * 179.97438 * 6 5 3 25 25 H 1.08994 * 109.53926 * 180.10533 * 11 2 1 26 26 H 1.09001 * 109.61540 * 290.63667 * 12 11 2 27 27 H 1.08994 * 109.62008 * 51.18334 * 12 11 2 28 28 H 1.08008 * 126.16755 * 90.71222 * 15 13 12 29 29 H 1.08002 * 126.16967 * 179.87488 * 16 15 13 30 30 H 1.08999 * 109.61946 * 69.35311 * 19 11 2 31 31 H 1.09010 * 109.61806 * 308.81739 * 19 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1710 1.2198 -0.3494 5 6 1.5309 2.3446 0.4490 6 7 0.3929 2.2706 1.1061 7 14 2.3135 4.0087 0.1208 8 1 2.4417 4.2152 -1.3441 9 1 1.4619 5.0789 0.6994 10 1 3.6593 4.0549 0.7468 11 6 2.1976 -1.2687 0.0006 12 6 1.8238 -2.0750 1.2497 13 6 2.4199 -3.4866 1.1184 14 1 2.3236 -4.0618 2.0393 15 6 3.8612 -3.3512 0.6598 16 6 3.8627 -3.3448 -0.6557 17 6 2.4235 -3.4854 -1.1189 18 1 2.3405 -4.0555 -2.0443 19 6 1.8279 -2.0737 -1.2506 20 8 1.7583 -4.1251 -0.0016 21 1 -0.3633 0.0777 1.0246 22 1 -0.3633 0.8484 -0.5798 23 1 -0.3632 -0.9264 -0.4450 24 1 -0.0393 3.0802 1.4202 25 1 3.2694 -1.0707 0.0024 26 1 2.2304 -1.5870 2.1355 27 1 0.7390 -2.1420 1.3309 28 1 4.7285 -3.2720 1.2986 29 1 4.7315 -3.2596 -1.2916 30 1 2.2373 -1.5848 -2.1346 31 1 0.7432 -2.1406 -1.3354 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172242281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:14 Heat of formation + Delta-G solvation = 15.895818 kcal Electronic energy + Delta-G solvation = -14396.516460 eV Core-core repulsion = 12065.797124 eV Total energy + Delta-G solvation = -2330.719336 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81319 -35.71800 -32.55670 -31.60085 -30.62442 -29.21479 -25.96660 -23.95545 -23.21297 -21.26146 -19.48492 -18.63949 -16.83746 -16.59248 -15.10245 -14.43497 -14.13564 -13.99805 -12.99831 -12.71122 -12.66489 -12.38466 -12.31642 -11.70601 -11.60602 -10.90818 -10.82524 -10.56489 -10.36500 -10.20271 -10.05867 -9.94547 -9.64307 -9.57449 -8.56346 -8.44247 -6.71468 -5.68292 -3.13319 2.31937 3.39959 3.45361 3.46341 4.30088 4.51207 4.88320 5.09363 5.30425 5.33641 5.51878 5.54476 5.61308 5.91527 5.92905 6.09274 6.14516 6.29595 6.35077 6.39194 6.67268 6.78261 6.89568 7.01250 7.07635 7.13279 7.45204 7.77596 7.84234 8.43982 9.28091 9.92220 10.41955 11.36512 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052513 B = 0.009403 C = 0.008974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.077667 B = 2977.198574 C = 3119.458907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.179 3.821 12 C -0.150 4.150 13 C 0.093 3.907 14 H 0.103 0.897 15 C -0.180 4.180 16 C -0.185 4.185 17 C 0.095 3.905 18 H 0.103 0.897 19 C -0.153 4.153 20 O -0.365 6.365 21 H 0.027 0.973 22 H 0.042 0.958 23 H 0.000 1.000 24 H 0.252 0.748 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.067 0.933 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -9.976 -2.214 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.317 5.317 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.190 4.190 13 C 0.035 3.965 14 H 0.121 0.879 15 C -0.198 4.198 16 C -0.203 4.203 17 C 0.037 3.963 18 H 0.121 0.879 19 C -0.193 4.193 20 O -0.284 6.284 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.018 0.982 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.086 0.914 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.424 -9.950 -2.143 11.099 hybrid contribution 0.562 1.226 -0.055 1.350 sum 4.987 -8.724 -2.198 10.286 Atomic orbital electron populations 1.20755 0.82780 0.95487 0.99181 1.43969 1.01810 1.00212 1.85692 1.19192 0.97659 0.85414 1.36104 0.91571 1.24999 0.97868 0.98387 0.98507 1.70076 1.18616 1.27010 1.39633 0.86340 0.78398 0.83896 0.77920 1.21144 1.21660 1.21017 1.20466 0.96062 0.85956 0.90431 1.22806 1.01478 0.93312 1.01381 1.22500 0.88711 0.94449 0.90837 0.87948 1.24266 0.98192 1.00575 0.96744 1.24258 0.98176 1.01074 0.96749 1.22420 0.88752 0.94112 0.91045 0.87899 1.22787 1.01618 0.93781 1.01076 1.89560 1.60346 1.62941 1.15549 0.95437 0.93973 0.98174 0.93771 0.91637 0.91222 0.91079 0.84419 0.84432 0.91390 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.14 7.85 59.85 0.47 4.61 16 2 N -0.60 -15.27 2.82 -173.13 -0.49 -15.75 16 3 C -0.25 -7.10 9.60 -15.06 -0.14 -7.24 16 4 H 0.07 1.80 7.82 -52.48 -0.41 1.39 16 5 C 0.00 0.01 5.10 -17.43 -0.09 -0.08 16 6 N -0.91 -26.88 10.65 55.49 0.59 -26.29 16 7 Si 0.90 22.10 29.57 -169.99 -5.03 17.07 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.18 3.78 2.28 -67.62 -0.15 3.63 16 12 C -0.15 -2.91 5.26 -26.16 -0.14 -3.04 16 13 C 0.09 1.51 4.70 -26.90 -0.13 1.38 16 14 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 15 C -0.18 -2.59 9.50 -35.59 -0.34 -2.93 16 16 C -0.18 -2.62 9.46 -35.59 -0.34 -2.96 16 17 C 0.09 1.49 4.71 -26.91 -0.13 1.37 16 18 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 19 C -0.15 -2.82 5.25 -26.17 -0.14 -2.95 16 20 O -0.36 -6.39 11.46 -35.23 -0.40 -6.79 16 21 H 0.03 0.75 7.41 -51.93 -0.38 0.37 16 22 H 0.04 1.15 7.21 -51.93 -0.37 0.77 16 23 H 0.00 0.00 6.32 -51.93 -0.33 -0.33 16 24 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.07 1.41 6.44 -51.93 -0.33 1.07 16 26 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.07 1.47 7.40 -51.93 -0.38 1.09 16 28 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 29 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.42 6.40 -51.92 -0.33 1.08 16 LS Contribution 245.54 15.07 3.70 3.70 Total: -1.00 -30.42 245.54 -6.97 -37.39 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.22 Total: -1.11 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.12 Total: -8.22 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.10 Total: -42.04 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.40 Total: -6.79 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.42 -6.97 -37.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172242281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.290 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds