Wall clock time and date at job start Sun Mar 29 2020 21:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 119.99676 * 2 1 4 4 H 1.08005 * 120.00135 * 201.93500 * 3 2 1 5 5 C 1.38814 * 120.00450 * 21.93165 * 3 2 1 6 6 N 1.31624 * 119.99502 * 12.93845 * 5 3 2 7 7 Si 1.86794 * 120.00461 * 192.93180 * 5 3 2 8 8 H 1.48502 * 109.47208 * 60.00202 * 7 5 3 9 9 H 1.48500 * 109.47413 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47293 * 300.00577 * 7 5 3 11 11 C 1.46499 * 120.00391 * 179.97438 * 2 1 3 12 12 C 1.53301 * 109.50381 * 300.21384 * 11 2 1 13 13 C 1.53795 * 108.58523 * 170.91232 * 12 11 2 14 14 H 1.09004 * 112.20779 * 171.11424 * 13 12 11 15 15 C 1.51846 * 108.16733 * 46.16151 * 13 12 11 16 16 C 1.31552 * 107.67131 * 270.84037 * 15 13 12 17 17 C 1.51848 * 107.66874 * 359.61744 * 16 15 13 18 18 H 1.09007 * 112.30647 * 213.96942 * 17 16 15 19 19 C 1.53300 * 109.50369 * 60.00348 * 11 2 1 20 20 O 1.44909 * 107.06264 * 294.80853 * 13 12 11 21 21 H 1.08992 * 109.47345 * 274.33781 * 1 2 3 22 22 H 1.08993 * 109.47132 * 34.34894 * 1 2 3 23 23 H 1.09003 * 109.46300 * 154.34230 * 1 2 3 24 24 H 0.97002 * 119.99563 * 179.97438 * 6 5 3 25 25 H 1.08994 * 109.53926 * 180.10533 * 11 2 1 26 26 H 1.09001 * 109.61540 * 290.63667 * 12 11 2 27 27 H 1.08994 * 109.62008 * 51.18334 * 12 11 2 28 28 H 1.08008 * 126.16755 * 90.71222 * 15 13 12 29 29 H 1.08002 * 126.16967 * 179.87488 * 16 15 13 30 30 H 1.08999 * 109.61946 * 69.35311 * 19 11 2 31 31 H 1.09010 * 109.61806 * 308.81739 * 19 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1710 1.2198 -0.3494 5 6 1.5309 2.3446 0.4490 6 7 0.3929 2.2706 1.1061 7 14 2.3135 4.0087 0.1208 8 1 2.4417 4.2152 -1.3441 9 1 1.4619 5.0789 0.6994 10 1 3.6593 4.0549 0.7468 11 6 2.1976 -1.2687 0.0006 12 6 1.8238 -2.0750 1.2497 13 6 2.4199 -3.4866 1.1184 14 1 2.3236 -4.0618 2.0393 15 6 3.8612 -3.3512 0.6598 16 6 3.8627 -3.3448 -0.6557 17 6 2.4235 -3.4854 -1.1189 18 1 2.3405 -4.0555 -2.0443 19 6 1.8279 -2.0737 -1.2506 20 8 1.7583 -4.1251 -0.0016 21 1 -0.3633 0.0777 1.0246 22 1 -0.3633 0.8484 -0.5798 23 1 -0.3632 -0.9264 -0.4450 24 1 -0.0393 3.0802 1.4202 25 1 3.2694 -1.0707 0.0024 26 1 2.2304 -1.5870 2.1355 27 1 0.7390 -2.1420 1.3309 28 1 4.7285 -3.2720 1.2986 29 1 4.7315 -3.2596 -1.2916 30 1 2.2373 -1.5848 -2.1346 31 1 0.7432 -2.1406 -1.3354 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172242281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:14 Heat of formation + Delta-G solvation = -3.448573 kcal Electronic energy + Delta-G solvation = -14397.355296 eV Core-core repulsion = 12065.797124 eV Total energy + Delta-G solvation = -2331.558172 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.14822 -37.59742 -34.26703 -33.10294 -31.99163 -31.01385 -28.07377 -25.73218 -24.60112 -22.96502 -20.65087 -20.15967 -18.87009 -17.98037 -17.01797 -16.03823 -15.63261 -15.49764 -14.87774 -14.41162 -14.34613 -13.90056 -13.57696 -13.29323 -13.11707 -12.85805 -12.71812 -12.39220 -12.16414 -11.99742 -11.93247 -11.51963 -11.31868 -10.98504 -10.62564 -9.75745 -8.79883 -7.82678 -5.30578 1.20487 1.45426 1.48247 1.54845 2.50041 3.06099 3.29720 3.57119 3.75324 3.83977 4.09516 4.18241 4.21885 4.38806 4.51329 4.68705 4.73664 4.74652 4.85983 4.92455 5.18726 5.23503 5.27100 5.41248 5.48351 5.60190 5.66128 5.69777 5.92856 6.32035 7.14200 7.87134 8.32581 9.20754 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052513 B = 0.009403 C = 0.008974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.077667 B = 2977.198574 C = 3119.458907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.612 5.612 3 C -0.265 4.265 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.278 1.278 9 H -0.295 1.295 10 H -0.274 1.274 11 C 0.174 3.826 12 C -0.144 4.144 13 C 0.094 3.906 14 H 0.124 0.876 15 C -0.186 4.186 16 C -0.181 4.181 17 C 0.094 3.906 18 H 0.132 0.868 19 C -0.146 4.146 20 O -0.380 6.380 21 H 0.000 1.000 22 H 0.015 0.985 23 H 0.024 0.976 24 H 0.247 0.753 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.164 0.836 29 H 0.168 0.832 30 H 0.071 0.929 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -10.925 -2.980 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.334 5.334 3 C -0.395 4.395 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.799 3.201 8 H -0.204 1.204 9 H -0.222 1.222 10 H -0.199 1.199 11 C 0.067 3.933 12 C -0.184 4.184 13 C 0.036 3.964 14 H 0.142 0.858 15 C -0.203 4.203 16 C -0.199 4.199 17 C 0.036 3.964 18 H 0.149 0.851 19 C -0.185 4.185 20 O -0.300 6.300 21 H 0.018 0.982 22 H 0.034 0.966 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.181 0.819 29 H 0.185 0.815 30 H 0.090 0.910 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.293 -10.937 -2.921 12.952 hybrid contribution -0.022 1.468 0.173 1.478 sum 6.271 -9.470 -2.748 11.686 Atomic orbital electron populations 1.20422 0.83313 0.95426 0.97165 1.44212 1.01834 1.01439 1.85906 1.19566 0.97974 0.86563 1.35383 0.91044 1.25807 0.98586 1.01904 0.98723 1.70254 1.20106 1.27444 1.40962 0.85287 0.77663 0.79297 0.77873 1.20431 1.22168 1.19942 1.20672 0.95466 0.84714 0.92418 1.22648 1.00282 0.95577 0.99912 1.22551 0.89805 0.92282 0.91727 0.85826 1.24460 0.97655 1.00897 0.97322 1.24516 0.97996 1.00343 0.97019 1.22581 0.89543 0.92401 0.91903 0.85060 1.22646 1.00870 0.95480 0.99538 1.89558 1.61190 1.62867 1.16346 0.98204 0.96584 0.95789 0.94341 0.91747 0.92542 0.93195 0.81878 0.81466 0.91038 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.51 7.85 127.77 1.00 10.51 16 2 N -0.61 -31.64 2.82 -701.67 -1.98 -33.62 16 3 C -0.26 -14.83 9.60 84.03 0.81 -14.02 16 4 H 0.07 3.84 7.82 -2.91 -0.02 3.82 16 5 C -0.06 -3.17 5.10 84.86 0.43 -2.73 16 6 N -0.94 -57.04 10.65 21.65 0.23 -56.81 16 7 Si 0.97 45.58 29.57 68.60 2.03 47.61 16 8 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 9 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 C 0.17 7.22 2.28 45.19 0.10 7.33 16 12 C -0.14 -5.56 5.26 30.96 0.16 -5.39 16 13 C 0.09 2.86 4.70 30.48 0.14 3.01 16 14 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 15 C -0.19 -4.75 9.50 25.49 0.24 -4.50 16 16 C -0.18 -4.46 9.46 25.49 0.24 -4.22 16 17 C 0.09 2.67 4.71 30.48 0.14 2.82 16 18 H 0.13 3.03 8.14 -2.38 -0.02 3.01 16 19 C -0.15 -5.15 5.25 30.96 0.16 -4.99 16 20 O -0.38 -12.48 11.46 -148.98 -1.71 -14.19 16 21 H 0.00 -0.02 7.41 -2.39 -0.02 -0.04 16 22 H 0.02 0.88 7.21 -2.39 -0.02 0.86 16 23 H 0.02 1.11 6.32 -2.39 -0.02 1.09 16 24 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.06 2.68 6.44 -2.39 -0.02 2.66 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 2.10 7.40 -2.39 -0.02 2.08 16 28 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.06 2.19 6.40 -2.38 -0.02 2.17 16 Total: -1.00 -65.41 245.54 3.12 -62.29 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.10 Total: 6.92 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 3.44 Total: -12.20 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -1.75 Total: -90.43 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.71 Total: -14.19 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -65.41 3.12 -62.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172242281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.840 kcal (2) G-P(sol) polarization free energy of solvation -65.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds