Wall clock time and date at job start Sun Mar 29 2020 21:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47197 * 179.97438 * 195.01410 * 3 2 1 5 5 O 1.42891 * 109.47336 * 297.67774 * 4 3 2 6 6 C 1.42903 * 114.00030 * 180.02562 * 5 4 3 7 7 C 1.53935 * 113.73471 * 111.23481 * 6 5 4 8 8 N 1.48193 * 86.10337 * 90.77945 * 7 6 5 9 9 C 1.46894 * 111.06841 * 137.52059 * 8 7 6 10 10 C 1.50700 * 109.47159 * 70.57068 * 9 8 7 11 11 H 1.07999 * 119.99907 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99829 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99789 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00031 * 359.97438 * 12 10 9 15 15 H 1.48492 * 109.47081 * 89.99879 * 14 12 10 16 16 H 1.48497 * 109.46734 * 209.99879 * 14 12 10 17 17 H 1.48502 * 109.47077 * 329.99929 * 14 12 10 18 18 C 1.47967 * 90.79407 * 24.60047 * 8 7 6 19 19 H 1.08996 * 109.47427 * 47.30429 * 1 2 3 20 20 H 1.09000 * 109.47271 * 167.30622 * 1 2 3 21 21 H 1.09004 * 109.47140 * 287.30780 * 1 2 3 22 22 H 1.09010 * 109.46732 * 177.68092 * 4 3 2 23 23 H 1.08998 * 109.47024 * 57.68522 * 4 3 2 24 24 H 1.09002 * 112.93710 * 339.66760 * 6 5 4 25 25 H 1.09000 * 113.76137 * 205.06320 * 7 6 5 26 26 H 1.09002 * 113.75885 * 336.43020 * 7 6 5 27 27 H 1.08999 * 109.46814 * 190.56779 * 9 8 7 28 28 H 1.08996 * 109.47288 * 310.56415 * 9 8 7 29 29 H 0.96995 * 120.00212 * 180.02562 * 13 12 10 30 30 H 1.09001 * 113.75575 * 221.08036 * 18 8 7 31 31 H 1.08993 * 113.75515 * 89.72269 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 8 4.5947 -0.6235 1.1933 6 6 6.0193 -0.6741 1.2936 7 6 6.5952 0.2305 2.3979 8 7 6.4685 -0.9472 3.2884 9 6 7.6532 -1.0915 4.1448 10 6 7.6680 0.0112 5.1718 11 1 6.8763 0.7456 5.1871 12 6 8.6918 0.0819 6.0927 13 7 8.7045 1.0440 6.9893 14 14 10.0601 -1.1896 6.0676 15 1 11.1564 -0.7196 5.1831 16 1 10.5826 -1.3816 7.4443 17 1 9.5289 -2.4783 5.5554 18 6 6.5401 -1.8597 2.1259 19 1 -0.3634 0.6968 -0.7553 20 1 -0.3634 -1.0025 -0.2258 21 1 -0.3633 0.3057 0.9812 22 1 4.4804 1.0291 -0.0414 23 1 4.4818 -0.5472 -0.8683 24 1 6.5173 -0.5620 0.3304 25 1 7.6258 0.5382 2.2206 26 1 5.9432 1.0605 2.6701 27 1 7.6213 -2.0573 4.6491 28 1 8.5533 -1.0306 3.5332 29 1 9.4249 1.0940 7.6368 30 1 5.8441 -2.6968 2.1812 31 1 7.5544 -2.1648 1.8690 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224358532.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:49 Heat of formation + Delta-G solvation = 44.171349 kcal Electronic energy + Delta-G solvation = -12997.255750 eV Core-core repulsion = 10667.762533 eV Total energy + Delta-G solvation = -2329.493217 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50460 -36.72883 -34.06501 -32.69941 -30.12030 -29.11265 -25.85954 -25.66692 -24.90436 -21.32063 -19.40266 -17.29323 -16.79770 -16.37462 -15.49210 -15.14712 -14.40112 -14.07388 -13.85876 -13.69381 -13.61709 -13.00929 -12.43682 -12.28900 -12.19926 -11.46772 -11.21650 -10.86025 -10.60727 -10.17426 -9.95391 -9.83585 -9.70149 -9.25053 -9.18874 -8.59184 -7.82774 -6.04889 -4.02825 2.40340 2.65590 3.27275 3.35485 3.38064 3.82541 4.33341 4.42047 4.82984 4.86198 5.14365 5.25354 5.27327 5.31315 5.39477 5.50103 5.51638 5.74282 5.79997 5.89756 6.12599 6.22888 6.41355 6.59514 6.79661 7.33558 7.38997 7.57735 7.77405 7.89907 8.62756 9.04171 9.56376 11.08480 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058240 B = 0.005500 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.650155 B = 5089.357104 C = 5332.552501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.171 4.171 3 C -0.184 4.184 4 C 0.175 3.825 5 O -0.348 6.348 6 C 0.055 3.945 7 C 0.004 3.996 8 N -0.458 5.458 9 C 0.126 3.874 10 C -0.511 4.511 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.267 1.267 18 C -0.005 4.005 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.031 0.969 28 H -0.010 1.010 29 H 0.264 0.736 30 H 0.087 0.913 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 -3.095 -15.898 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.171 4.171 3 C -0.185 4.185 4 C 0.099 3.901 5 O -0.266 6.266 6 C -0.004 4.004 7 C -0.125 4.125 8 N -0.181 5.181 9 C -0.001 4.001 10 C -0.549 4.549 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.704 3.296 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.191 1.191 18 C -0.134 4.134 19 H 0.098 0.902 20 H 0.098 0.902 21 H 0.102 0.898 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.049 0.951 28 H 0.008 0.992 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.071 -3.150 -15.108 17.902 hybrid contribution 1.810 -0.450 -0.439 1.916 sum -7.261 -3.600 -15.547 17.533 Atomic orbital electron populations 1.18882 0.84449 1.02995 1.03253 1.22416 0.93871 1.01359 0.99478 1.21808 0.93068 1.01328 1.02246 1.19084 0.84262 0.98068 0.88688 1.88072 1.20210 1.79184 1.39164 1.23733 0.80926 0.98297 0.97398 1.24250 1.00155 0.96383 0.91722 1.68581 1.38776 1.01322 1.09392 1.20706 0.86972 0.98717 0.93727 1.20987 1.09744 1.11253 1.12923 0.90290 1.24929 0.97815 0.95468 0.95137 1.69899 1.33163 1.32411 1.18430 0.86832 0.82555 0.82712 0.77496 1.20343 1.21082 1.19137 1.24196 0.99724 0.97029 0.92456 0.90208 0.90150 0.89842 0.90878 0.91182 0.91142 0.90662 0.89568 0.95071 0.99210 0.92652 0.89476 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.33 10.32 34.37 0.35 0.02 16 2 C -0.17 -2.22 14.13 -37.12 -0.52 -2.74 16 3 C -0.18 -2.64 13.73 -37.12 -0.51 -3.15 16 4 C 0.17 2.28 6.26 34.37 0.22 2.50 16 5 O -0.35 -5.90 10.32 -35.23 -0.36 -6.26 16 6 C 0.05 0.87 4.48 -25.80 -0.12 0.76 16 7 C 0.00 0.08 7.32 -2.63 -0.02 0.06 16 8 N -0.46 -10.28 6.25 -239.73 -1.50 -11.77 16 9 C 0.13 3.17 3.65 -4.98 -0.02 3.15 16 10 C -0.51 -15.04 9.40 -34.44 -0.32 -15.36 16 11 H 0.08 2.55 8.05 -52.49 -0.42 2.13 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 14 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.00 -0.08 7.81 -2.76 -0.02 -0.10 16 19 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 25 H 0.08 1.42 7.79 -51.93 -0.40 1.02 16 26 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 27 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 28 H -0.01 -0.23 7.13 -51.93 -0.37 -0.60 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 30 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.07 1.14 7.79 -51.93 -0.40 0.74 16 LS Contribution 272.46 15.07 4.11 4.11 Total: -1.00 -33.80 272.46 -7.22 -41.02 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.51 Total: -3.92 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -1.06 Total: -12.95 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.73 Total: -39.09 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.36 Total: -6.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.80 -7.22 -41.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224358532.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.191 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds