Wall clock time and date at job start Sun Mar 29 2020 21:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47197 * 179.97438 * 195.01410 * 3 2 1 5 5 O 1.42891 * 109.47336 * 297.67774 * 4 3 2 6 6 C 1.42903 * 114.00030 * 180.02562 * 5 4 3 7 7 C 1.53935 * 113.73471 * 111.23481 * 6 5 4 8 8 N 1.48193 * 86.10337 * 90.77945 * 7 6 5 9 9 C 1.46894 * 111.06841 * 137.52059 * 8 7 6 10 10 C 1.50700 * 109.47159 * 70.57068 * 9 8 7 11 11 H 1.07999 * 119.99907 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99829 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99789 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00031 * 359.97438 * 12 10 9 15 15 H 1.48492 * 109.47081 * 89.99879 * 14 12 10 16 16 H 1.48497 * 109.46734 * 209.99879 * 14 12 10 17 17 H 1.48502 * 109.47077 * 329.99929 * 14 12 10 18 18 C 1.47967 * 90.79407 * 24.60047 * 8 7 6 19 19 H 1.08996 * 109.47427 * 47.30429 * 1 2 3 20 20 H 1.09000 * 109.47271 * 167.30622 * 1 2 3 21 21 H 1.09004 * 109.47140 * 287.30780 * 1 2 3 22 22 H 1.09010 * 109.46732 * 177.68092 * 4 3 2 23 23 H 1.08998 * 109.47024 * 57.68522 * 4 3 2 24 24 H 1.09002 * 112.93710 * 339.66760 * 6 5 4 25 25 H 1.09000 * 113.76137 * 205.06320 * 7 6 5 26 26 H 1.09002 * 113.75885 * 336.43020 * 7 6 5 27 27 H 1.08999 * 109.46814 * 190.56779 * 9 8 7 28 28 H 1.08996 * 109.47288 * 310.56415 * 9 8 7 29 29 H 0.96995 * 120.00212 * 180.02562 * 13 12 10 30 30 H 1.09001 * 113.75575 * 221.08036 * 18 8 7 31 31 H 1.08993 * 113.75515 * 89.72269 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 8 4.5947 -0.6235 1.1933 6 6 6.0193 -0.6741 1.2936 7 6 6.5952 0.2305 2.3979 8 7 6.4685 -0.9472 3.2884 9 6 7.6532 -1.0915 4.1448 10 6 7.6680 0.0112 5.1718 11 1 6.8763 0.7456 5.1871 12 6 8.6918 0.0819 6.0927 13 7 8.7045 1.0440 6.9893 14 14 10.0601 -1.1896 6.0676 15 1 11.1564 -0.7196 5.1831 16 1 10.5826 -1.3816 7.4443 17 1 9.5289 -2.4783 5.5554 18 6 6.5401 -1.8597 2.1259 19 1 -0.3634 0.6968 -0.7553 20 1 -0.3634 -1.0025 -0.2258 21 1 -0.3633 0.3057 0.9812 22 1 4.4804 1.0291 -0.0414 23 1 4.4818 -0.5472 -0.8683 24 1 6.5173 -0.5620 0.3304 25 1 7.6258 0.5382 2.2206 26 1 5.9432 1.0605 2.6701 27 1 7.6213 -2.0573 4.6491 28 1 8.5533 -1.0306 3.5332 29 1 9.4249 1.0940 7.6368 30 1 5.8441 -2.6968 2.1812 31 1 7.5544 -2.1648 1.8690 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224358532.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:49 Heat of formation + Delta-G solvation = 18.482395 kcal Electronic energy + Delta-G solvation = -12998.369707 eV Core-core repulsion = 10667.762533 eV Total energy + Delta-G solvation = -2330.607174 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93620 -38.02235 -35.13658 -34.76640 -31.70056 -30.29857 -27.37872 -26.98203 -26.30010 -23.19920 -20.82458 -19.02221 -18.38368 -17.54770 -16.87470 -16.57197 -16.05914 -15.61761 -15.02907 -14.77561 -14.51031 -14.36018 -14.32221 -13.68618 -13.54238 -13.12430 -12.83986 -12.41196 -12.28892 -11.80577 -11.55227 -11.39858 -11.02501 -10.93716 -10.82915 -10.31918 -9.47147 -8.31749 -6.37150 1.32886 1.36620 1.38119 1.47948 1.67666 2.32967 2.75545 3.01177 3.22835 3.48253 3.61068 3.96338 4.23331 4.46963 4.49029 4.52528 4.64494 4.66052 4.74943 4.80976 4.82267 4.82904 4.89296 5.02072 5.05828 5.42556 5.76726 6.01045 6.26834 6.55150 6.61066 6.68659 7.27163 8.85570 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058240 B = 0.005500 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.650155 B = 5089.357104 C = 5332.552501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.170 4.170 3 C -0.236 4.236 4 C 0.170 3.830 5 O -0.379 6.379 6 C 0.079 3.921 7 C -0.005 4.005 8 N -0.500 5.500 9 C 0.138 3.862 10 C -0.525 4.525 11 H 0.026 0.974 12 C 0.006 3.994 13 N -0.950 5.950 14 Si 0.956 3.044 15 H -0.260 1.260 16 H -0.281 1.281 17 H -0.249 1.249 18 C -0.002 4.002 19 H 0.103 0.897 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.101 0.899 24 H 0.120 0.880 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.006 0.994 29 H 0.268 0.732 30 H 0.091 0.909 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.951 -4.781 -18.023 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.171 4.171 3 C -0.236 4.236 4 C 0.095 3.905 5 O -0.298 6.298 6 C 0.020 3.980 7 C -0.134 4.134 8 N -0.223 5.223 9 C 0.010 3.990 10 C -0.563 4.563 11 H 0.045 0.955 12 C -0.191 4.191 13 N -0.590 5.590 14 Si 0.779 3.221 15 H -0.185 1.185 16 H -0.207 1.207 17 H -0.172 1.172 18 C -0.130 4.130 19 H 0.121 0.879 20 H 0.116 0.884 21 H 0.109 0.891 22 H 0.102 0.898 23 H 0.119 0.881 24 H 0.137 0.863 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.529 -4.835 -17.261 19.851 hybrid contribution 1.455 0.168 0.223 1.481 sum -7.074 -4.667 -17.038 19.029 Atomic orbital electron populations 1.19179 0.81661 1.04738 1.04471 1.23533 0.95342 1.00110 0.98064 1.22439 0.94240 1.02960 1.03927 1.19361 0.83884 0.98964 0.88243 1.88023 1.20753 1.79569 1.41493 1.23530 0.80886 0.95287 0.98261 1.24292 1.00360 0.95569 0.93157 1.68492 1.37794 1.04179 1.11834 1.20473 0.88937 0.96303 0.93322 1.21221 1.08539 1.11751 1.14827 0.95514 1.25975 1.00930 0.97941 0.94303 1.70067 1.34584 1.34812 1.19544 0.85584 0.78669 0.79876 0.78020 1.18495 1.20668 1.17246 1.24306 1.01396 0.96996 0.90344 0.87893 0.88424 0.89095 0.89751 0.88104 0.86258 0.90215 0.91994 0.95520 0.97602 0.92297 0.89111 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.65 10.32 70.18 0.72 0.07 16 2 C -0.17 -4.23 14.13 31.12 0.44 -3.79 16 3 C -0.24 -6.58 13.73 31.12 0.43 -6.15 16 4 C 0.17 4.18 6.26 70.18 0.44 4.62 16 5 O -0.38 -12.40 10.32 -148.98 -1.54 -13.93 16 6 C 0.08 2.32 4.48 31.24 0.14 2.46 16 7 C 0.00 -0.17 7.32 86.36 0.63 0.46 16 8 N -0.50 -22.34 6.25 -915.58 -5.72 -28.06 16 9 C 0.14 6.83 3.65 85.56 0.31 7.14 16 10 C -0.53 -31.86 9.40 25.60 0.24 -31.62 16 11 H 0.03 1.83 8.05 -2.91 -0.02 1.81 16 12 C 0.01 0.34 5.47 84.66 0.46 0.81 16 13 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 14 Si 0.96 44.47 27.47 68.60 1.88 46.35 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 18 C 0.00 -0.06 7.81 86.41 0.67 0.62 16 19 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 22 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.12 2.40 7.89 -2.39 -0.02 2.38 16 25 H 0.08 2.96 7.79 -2.39 -0.02 2.95 16 26 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 28 H 0.01 0.29 7.13 -2.39 -0.02 0.27 16 29 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 30 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.10 2.70 7.79 -2.39 -0.02 2.68 16 Total: -1.00 -76.16 272.46 0.46 -75.70 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.04 Total: 5.97 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 4.49 Total: -25.40 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -5.42 Total: -88.69 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.54 Total: -13.93 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -76.16 0.46 -75.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224358532.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.187 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds