Wall clock time and date at job start Sun Mar 29 2020 21:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.46886 * 313.11716 * 4 3 2 6 6 C 1.42908 * 113.99784 * 179.97438 * 5 4 3 7 7 H 1.09005 * 110.63665 * 26.86414 * 6 5 4 8 8 C 1.55156 * 110.71739 * 150.00124 * 6 5 4 9 9 C 1.54906 * 101.61451 * 154.02577 * 8 6 5 10 10 N 1.47471 * 104.81210 * 323.04512 * 9 8 6 11 11 C 1.36937 * 125.62509 * 204.14198 * 10 9 8 12 12 H 1.08004 * 119.99479 * 179.91598 * 11 10 9 13 13 C 1.38806 * 120.00537 * 359.91425 * 11 10 9 14 14 N 1.31628 * 120.00035 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00199 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47240 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47149 * 120.00098 * 15 13 11 18 18 H 1.48501 * 109.46780 * 239.99986 * 15 13 11 19 19 C 1.47017 * 108.71970 * 24.07007 * 10 9 8 20 20 H 1.09002 * 109.47158 * 46.87940 * 1 2 3 21 21 H 1.08995 * 109.47377 * 166.88163 * 1 2 3 22 22 H 1.08998 * 109.47165 * 286.88288 * 1 2 3 23 23 H 1.09004 * 109.47273 * 193.12031 * 4 3 2 24 24 H 1.08999 * 109.46729 * 73.12021 * 4 3 2 25 25 H 1.09002 * 111.00677 * 272.12161 * 8 6 5 26 26 H 1.09002 * 111.00564 * 35.93419 * 8 6 5 27 27 H 1.09008 * 110.36753 * 81.85112 * 9 8 6 28 28 H 1.09001 * 110.37094 * 204.16995 * 9 8 6 29 29 H 0.96994 * 120.00079 * 179.97438 * 14 13 11 30 30 H 1.08998 * 109.88206 * 239.55467 * 19 10 9 31 31 H 1.09004 * 110.01118 * 118.46560 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 8 4.5951 -0.9186 0.9834 6 6 6.0198 -0.9949 1.0654 7 1 6.4740 -0.0588 0.7402 8 6 6.4683 -1.3507 2.5075 9 6 7.8373 -2.0283 2.2500 10 7 7.6521 -2.7896 1.0007 11 6 8.3801 -3.8847 0.6186 12 1 8.1654 -4.3754 -0.3193 13 6 9.3940 -4.3641 1.4365 14 7 9.6560 -3.7658 2.5793 15 14 10.3875 -5.8575 0.9149 16 1 9.8995 -6.3416 -0.4014 17 1 11.8208 -5.4850 0.8055 18 1 10.2315 -6.9336 1.9263 19 6 6.5557 -2.1796 0.2344 20 1 -0.3633 0.7025 -0.7501 21 1 -0.3634 -1.0008 -0.2332 22 1 -0.3633 0.2984 0.9833 23 1 4.4805 1.0030 0.2333 24 1 4.4815 -0.2962 -0.9834 25 1 6.5849 -0.4521 3.1134 26 1 5.7699 -2.0457 2.9736 27 1 8.6154 -1.2754 2.1233 28 1 8.0885 -2.7001 3.0708 29 1 10.3642 -4.1010 3.1510 30 1 5.7626 -2.9103 0.0763 31 1 6.9262 -1.8211 -0.7260 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224358557.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:51 Heat of formation + Delta-G solvation = 28.438856 kcal Electronic energy + Delta-G solvation = -13219.675406 eV Core-core repulsion = 10889.499976 eV Total energy + Delta-G solvation = -2330.175429 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.43228 -36.06469 -34.05062 -32.18188 -29.82129 -28.97985 -27.07544 -25.60156 -24.20086 -20.26779 -20.11720 -17.21733 -16.91565 -16.26759 -15.20836 -14.69790 -14.36257 -14.02279 -13.70676 -13.59303 -13.35568 -12.43434 -12.17753 -11.75401 -11.58924 -11.30212 -10.94945 -10.78887 -10.30865 -10.08821 -10.05078 -9.87612 -9.74356 -9.51704 -9.05623 -8.64422 -6.82582 -5.64258 -3.06097 2.48492 2.69918 3.41413 3.46664 3.49446 3.97151 4.48243 4.59936 5.27037 5.30759 5.39080 5.43623 5.44673 5.51460 5.54804 5.62227 5.74952 5.79810 5.89513 6.35268 6.54152 6.60423 6.65840 6.74103 7.49923 7.57437 7.64216 7.64644 7.86213 8.36591 9.22877 9.83571 10.47920 11.40059 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064765 B = 0.005703 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.225720 B = 4908.537827 C = 5135.280313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.179 4.179 3 C -0.179 4.179 4 C 0.174 3.826 5 O -0.373 6.373 6 C 0.075 3.925 7 H 0.067 0.933 8 C -0.139 4.139 9 C 0.152 3.848 10 N -0.603 5.603 11 C -0.221 4.221 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.923 5.923 15 Si 0.916 3.084 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.117 3.883 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.015 0.985 28 H 0.111 0.889 29 H 0.252 0.748 30 H 0.034 0.966 31 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 8.117 -3.566 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.179 4.179 3 C -0.179 4.179 4 C 0.098 3.902 5 O -0.292 6.292 6 C 0.017 3.983 7 H 0.085 0.915 8 C -0.178 4.178 9 C 0.028 3.972 10 N -0.330 5.330 11 C -0.349 4.349 12 H 0.096 0.904 13 C -0.207 4.207 14 N -0.572 5.572 15 Si 0.746 3.254 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.217 1.217 19 C -0.009 4.009 20 H 0.097 0.903 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.033 0.967 28 H 0.129 0.871 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.952 7.876 -3.390 14.710 hybrid contribution 0.710 -0.535 -0.505 1.022 sum -11.242 7.341 -3.896 13.980 Atomic orbital electron populations 1.18858 0.84504 1.03078 1.02978 1.22393 0.93850 1.00909 1.00774 1.21949 0.93154 1.01377 1.01439 1.19069 0.83968 0.93769 0.93363 1.88013 1.22236 1.62146 1.56794 1.23305 0.78658 0.97870 0.98455 0.91518 1.23180 1.00502 1.00416 0.93667 1.21976 0.89364 0.94098 0.91805 1.44409 1.37084 1.32024 1.19459 1.19150 1.10148 1.02537 1.03110 0.90367 1.24798 0.99223 0.99707 0.97006 1.69793 1.33650 1.41648 1.12129 0.85972 0.79700 0.82068 0.77610 1.20519 1.21738 1.21700 1.21680 0.91745 0.93612 0.93880 0.90264 0.90079 0.90138 0.91171 0.90972 0.91912 0.91109 0.96735 0.87146 0.93740 0.94808 0.96022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.32 10.32 34.37 0.35 0.03 16 2 C -0.18 -2.40 14.13 -37.12 -0.52 -2.92 16 3 C -0.18 -2.70 13.73 -37.12 -0.51 -3.21 16 4 C 0.17 2.55 6.25 34.37 0.21 2.76 16 5 O -0.37 -6.85 10.04 -35.23 -0.35 -7.21 16 6 C 0.07 1.43 3.44 -24.90 -0.09 1.34 16 7 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 8 C -0.14 -2.83 6.81 -24.58 -0.17 -3.00 16 9 C 0.15 3.81 5.89 -2.50 -0.01 3.79 16 10 N -0.60 -16.11 3.40 -170.04 -0.58 -16.68 16 11 C -0.22 -6.34 10.27 -15.06 -0.15 -6.50 16 12 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 13 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 14 N -0.92 -27.25 10.09 55.49 0.56 -26.69 16 15 Si 0.92 22.35 29.55 -169.99 -5.02 17.33 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 C 0.12 2.62 7.02 -3.07 -0.02 2.60 16 20 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.11 3.08 5.88 -51.93 -0.31 2.77 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 268.89 15.07 4.05 4.05 Total: -1.00 -31.95 268.89 -6.83 -38.77 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -4.48 Total: -4.02 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.00 Total: -5.55 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.02 Total: -43.38 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.35 Total: -7.21 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.95 -6.83 -38.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224358557.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.211 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds