Wall clock time and date at job start Sun Mar 29 2020 21:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.46886 * 313.11716 * 4 3 2 6 6 C 1.42908 * 113.99784 * 179.97438 * 5 4 3 7 7 H 1.09005 * 110.63665 * 26.86414 * 6 5 4 8 8 C 1.55156 * 110.71739 * 150.00124 * 6 5 4 9 9 C 1.54906 * 101.61451 * 154.02577 * 8 6 5 10 10 N 1.47471 * 104.81210 * 323.04512 * 9 8 6 11 11 C 1.36937 * 125.62509 * 204.14198 * 10 9 8 12 12 H 1.08004 * 119.99479 * 179.91598 * 11 10 9 13 13 C 1.38806 * 120.00537 * 359.91425 * 11 10 9 14 14 N 1.31628 * 120.00035 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00199 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47240 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47149 * 120.00098 * 15 13 11 18 18 H 1.48501 * 109.46780 * 239.99986 * 15 13 11 19 19 C 1.47017 * 108.71970 * 24.07007 * 10 9 8 20 20 H 1.09002 * 109.47158 * 46.87940 * 1 2 3 21 21 H 1.08995 * 109.47377 * 166.88163 * 1 2 3 22 22 H 1.08998 * 109.47165 * 286.88288 * 1 2 3 23 23 H 1.09004 * 109.47273 * 193.12031 * 4 3 2 24 24 H 1.08999 * 109.46729 * 73.12021 * 4 3 2 25 25 H 1.09002 * 111.00677 * 272.12161 * 8 6 5 26 26 H 1.09002 * 111.00564 * 35.93419 * 8 6 5 27 27 H 1.09008 * 110.36753 * 81.85112 * 9 8 6 28 28 H 1.09001 * 110.37094 * 204.16995 * 9 8 6 29 29 H 0.96994 * 120.00079 * 179.97438 * 14 13 11 30 30 H 1.08998 * 109.88206 * 239.55467 * 19 10 9 31 31 H 1.09004 * 110.01118 * 118.46560 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 8 4.5951 -0.9186 0.9834 6 6 6.0198 -0.9949 1.0654 7 1 6.4740 -0.0588 0.7402 8 6 6.4683 -1.3507 2.5075 9 6 7.8373 -2.0283 2.2500 10 7 7.6521 -2.7896 1.0007 11 6 8.3801 -3.8847 0.6186 12 1 8.1654 -4.3754 -0.3193 13 6 9.3940 -4.3641 1.4365 14 7 9.6560 -3.7658 2.5793 15 14 10.3875 -5.8575 0.9149 16 1 9.8995 -6.3416 -0.4014 17 1 11.8208 -5.4850 0.8055 18 1 10.2315 -6.9336 1.9263 19 6 6.5557 -2.1796 0.2344 20 1 -0.3633 0.7025 -0.7501 21 1 -0.3634 -1.0008 -0.2332 22 1 -0.3633 0.2984 0.9833 23 1 4.4805 1.0030 0.2333 24 1 4.4815 -0.2962 -0.9834 25 1 6.5849 -0.4521 3.1134 26 1 5.7699 -2.0457 2.9736 27 1 8.6154 -1.2754 2.1233 28 1 8.0885 -2.7001 3.0708 29 1 10.3642 -4.1010 3.1510 30 1 5.7626 -2.9103 0.0763 31 1 6.9262 -1.8211 -0.7260 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224358557.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:50 Heat of formation + Delta-G solvation = 8.480484 kcal Electronic energy + Delta-G solvation = -13220.540865 eV Core-core repulsion = 10889.499976 eV Total energy + Delta-G solvation = -2331.040889 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.97308 -37.72273 -35.12584 -34.12742 -31.31673 -30.39493 -28.79502 -26.85161 -26.03324 -22.12452 -21.82941 -19.03462 -18.34002 -17.61154 -16.74895 -16.50979 -15.84630 -15.45286 -15.05593 -14.41786 -14.34580 -14.26023 -13.69723 -13.58531 -13.18002 -12.99209 -12.76274 -12.63556 -12.09719 -11.98392 -11.79728 -11.40636 -11.06731 -10.94724 -10.77529 -10.34241 -8.92690 -7.79659 -5.25067 1.39410 1.47019 1.48488 1.58970 1.67382 2.47888 2.84494 3.30650 3.46105 3.70306 3.82118 4.06537 4.16455 4.31867 4.45870 4.62851 4.70990 4.76746 4.82587 4.83628 4.97577 4.99624 5.03086 5.06646 5.43829 5.59301 5.76286 6.21952 6.29707 6.60471 7.08110 7.74018 8.37634 9.22804 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064765 B = 0.005703 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.225720 B = 4908.537827 C = 5135.280313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.166 4.166 3 C -0.235 4.235 4 C 0.170 3.830 5 O -0.390 6.390 6 C 0.092 3.908 7 H 0.096 0.904 8 C -0.127 4.127 9 C 0.154 3.846 10 N -0.626 5.626 11 C -0.244 4.244 12 H 0.080 0.920 13 C -0.065 4.065 14 N -0.949 5.949 15 Si 0.984 3.016 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.290 1.290 19 C 0.112 3.888 20 H 0.103 0.897 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.001 0.999 28 H 0.077 0.923 29 H 0.249 0.751 30 H 0.021 0.979 31 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 8.841 -4.309 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.166 4.166 3 C -0.236 4.236 4 C 0.095 3.905 5 O -0.309 6.309 6 C 0.034 3.966 7 H 0.114 0.886 8 C -0.166 4.166 9 C 0.030 3.970 10 N -0.353 5.353 11 C -0.373 4.373 12 H 0.098 0.902 13 C -0.258 4.258 14 N -0.598 5.598 15 Si 0.812 3.188 16 H -0.192 1.192 17 H -0.215 1.215 18 H -0.217 1.217 19 C -0.013 4.013 20 H 0.121 0.879 21 H 0.112 0.888 22 H 0.115 0.885 23 H 0.112 0.888 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.019 0.981 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.237 8.617 -4.151 16.331 hybrid contribution 0.981 -0.736 -0.302 1.263 sum -12.256 7.881 -4.453 15.236 Atomic orbital electron populations 1.19190 0.81425 1.04600 1.04740 1.23523 0.95248 0.99039 0.98831 1.22333 0.94002 1.03550 1.03668 1.19293 0.84178 0.94160 0.92899 1.87974 1.21320 1.63533 1.58117 1.23049 0.79511 0.97563 0.96449 0.88611 1.23001 0.97327 1.01011 0.95245 1.21762 0.91720 0.93200 0.90354 1.44720 1.37860 1.32105 1.20665 1.19509 1.10785 1.03575 1.03395 0.90248 1.25671 1.00385 1.02598 0.97129 1.70036 1.33918 1.42902 1.12964 0.84927 0.77874 0.78401 0.77592 1.19232 1.21538 1.21673 1.21847 0.90320 0.94539 0.94630 0.87866 0.88793 0.88516 0.88758 0.90054 0.88693 0.92198 0.98098 0.90486 0.94118 0.96067 0.94895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.61 10.32 70.18 0.72 0.11 16 2 C -0.17 -4.12 14.13 31.12 0.44 -3.68 16 3 C -0.24 -6.79 13.73 31.12 0.43 -6.36 16 4 C 0.17 4.67 6.25 70.18 0.44 5.11 16 5 O -0.39 -13.76 10.04 -148.98 -1.50 -15.26 16 6 C 0.09 3.37 3.44 31.78 0.11 3.48 16 7 H 0.10 2.96 7.82 -2.38 -0.02 2.95 16 8 C -0.13 -5.08 6.81 31.98 0.22 -4.86 16 9 C 0.15 7.84 5.89 86.85 0.51 8.35 16 10 N -0.63 -33.87 3.40 -691.89 -2.35 -36.22 16 11 C -0.24 -14.17 10.27 84.03 0.86 -13.31 16 12 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 13 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 14 N -0.95 -57.18 10.09 21.65 0.22 -56.97 16 15 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 C 0.11 4.98 7.02 86.73 0.61 5.59 16 20 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.09 2.10 8.11 -2.38 -0.02 2.08 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.00 0.05 8.14 -2.38 -0.02 0.04 16 28 H 0.08 4.44 5.88 -2.39 -0.01 4.42 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.02 0.99 8.06 -2.39 -0.02 0.97 16 31 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -69.43 268.89 4.31 -65.12 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.10 Total: 3.88 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.81 Total: -8.87 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -2.13 Total: -93.18 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -1.50 Total: -15.26 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -69.43 4.31 -65.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224358557.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.603 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds