Wall clock time and date at job start Sun Mar 29 2020 22:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47643 * 2 1 4 4 C 1.35044 * 126.39547 * 261.83724 * 3 2 1 5 5 N 1.30504 * 108.70001 * 179.82212 * 4 3 2 6 6 C 1.34128 * 109.25097 * 0.43694 * 5 4 3 7 7 C 1.34668 * 108.02663 * 359.72807 * 6 5 4 8 8 C 1.50690 * 126.59473 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47250 * 265.15952 * 8 7 6 10 10 C 1.46498 * 119.99776 * 265.71126 * 9 8 7 11 11 C 1.36937 * 120.00115 * 85.71432 * 9 8 7 12 12 H 1.08001 * 119.99831 * 20.24727 * 11 9 8 13 13 C 1.38807 * 119.99958 * 200.25157 * 11 9 8 14 14 N 1.31625 * 120.00146 * 13.90909 * 13 11 9 15 15 Si 1.86804 * 119.99969 * 193.90935 * 13 11 9 16 16 H 1.48498 * 109.47178 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47048 * 119.99886 * 15 13 11 18 18 H 1.48495 * 109.47255 * 239.99645 * 15 13 11 19 19 H 1.08996 * 109.47440 * 174.97377 * 1 2 3 20 20 H 1.09007 * 109.47007 * 294.97436 * 1 2 3 21 21 H 1.08994 * 109.47310 * 54.97220 * 1 2 3 22 22 H 1.09003 * 109.47635 * 120.00043 * 2 1 3 23 23 H 1.08999 * 109.47060 * 240.00040 * 2 1 3 24 24 H 1.08000 * 125.65455 * 359.96659 * 4 3 2 25 25 H 1.08004 * 125.98725 * 179.72938 * 6 5 4 26 26 H 1.09003 * 109.47560 * 25.15780 * 8 7 6 27 27 H 1.09007 * 109.47545 * 145.15799 * 8 7 6 28 28 H 1.08998 * 109.46973 * 95.21106 * 10 9 8 29 29 H 1.09002 * 109.47166 * 215.20761 * 10 9 8 30 30 H 1.08992 * 109.47415 * 335.21058 * 10 9 8 31 31 H 0.96998 * 119.99884 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4311 2.0851 -1.0760 5 7 2.7889 3.2773 -0.6839 6 6 2.6282 3.3728 0.6443 7 6 2.1471 2.1972 1.0914 8 6 1.8138 1.8474 2.5188 9 7 2.9585 1.1731 3.1364 10 6 3.0286 -0.2901 3.1464 11 6 3.9628 1.9106 3.7043 12 1 3.7825 2.9351 3.9947 13 6 5.2126 1.3415 3.9067 14 7 5.5219 0.2060 3.3174 15 14 6.4555 2.1872 5.0156 16 1 5.8669 3.4398 5.5540 17 1 6.8106 1.2845 6.1400 18 1 7.6769 2.5092 4.2348 19 1 -0.3634 -1.0237 -0.0900 20 1 -0.3633 0.4339 0.9316 21 1 -0.3633 0.5898 -0.8415 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 2.4581 1.7225 -2.0930 25 1 2.8464 4.2405 1.2492 26 1 1.5867 2.7583 3.0726 27 1 0.9483 1.1851 2.5381 28 1 3.6215 -0.6313 2.2978 29 1 3.4944 -0.6252 4.0731 30 1 2.0222 -0.7026 3.0758 31 1 6.3951 -0.1919 3.4591 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237591611.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:06 Heat of formation + Delta-G solvation = 82.877391 kcal Electronic energy + Delta-G solvation = -14153.711309 eV Core-core repulsion = 11858.189263 eV Total energy + Delta-G solvation = -2295.522046 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.30994 -35.63517 -34.41338 -31.62312 -29.68694 -29.09475 -26.02471 -25.29930 -23.34793 -21.47649 -20.64590 -19.00429 -16.79701 -16.41320 -15.07047 -14.61577 -14.42112 -13.63513 -13.45834 -13.13390 -13.03961 -12.74148 -12.28251 -12.03751 -11.56819 -11.28078 -11.05498 -10.89092 -10.67471 -10.46787 -10.00340 -9.92101 -9.23747 -8.87104 -8.57311 -7.57094 -6.84949 -5.75601 -3.18907 2.81404 3.38681 3.44190 3.46311 3.48406 3.93663 4.51808 4.92876 5.17721 5.24665 5.35399 5.43723 5.58059 5.65670 5.71669 5.83163 5.95579 6.14733 6.23709 6.47836 6.58280 6.65188 7.17898 7.27663 7.54802 7.61174 7.80147 7.93723 8.34074 8.81290 9.19354 9.81317 10.28135 11.30281 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.037576 B = 0.010600 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.981985 B = 2640.999472 C = 2981.458669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 N -0.450 5.450 4 C 0.150 3.850 5 N -0.500 5.500 6 C -0.039 4.039 7 C -0.003 4.003 8 C 0.213 3.787 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.250 4.250 12 H 0.073 0.927 13 C 0.002 3.998 14 N -0.909 5.909 15 Si 0.906 3.094 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.291 1.291 19 H 0.070 0.930 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.191 0.809 25 H 0.158 0.842 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.027 0.973 29 H 0.048 0.952 30 H -0.004 1.004 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 -1.958 -4.814 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.135 5.135 4 C -0.131 4.131 5 N -0.218 5.218 6 C -0.187 4.187 7 C -0.121 4.121 8 C 0.084 3.916 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.379 4.379 12 H 0.091 0.909 13 C -0.196 4.196 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.218 1.218 19 H 0.089 0.911 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.114 0.886 23 H 0.103 0.897 24 H 0.207 0.793 25 H 0.176 0.824 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.015 0.985 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.983 -1.594 -5.267 10.535 hybrid contribution 0.765 -0.365 0.791 1.160 sum -8.218 -1.960 -4.476 9.561 Atomic orbital electron populations 1.22134 0.94779 1.02424 1.02910 1.21793 0.94877 0.81106 1.04667 1.45317 1.48476 1.11965 1.07696 1.24568 1.05713 0.89404 0.93424 1.70111 1.20668 1.18187 1.12871 1.21827 1.07665 0.98377 0.90812 1.23000 1.06130 0.91406 0.91573 1.19480 0.90514 0.97122 0.84496 1.44185 1.21628 1.02008 1.63380 1.20864 0.93631 0.82320 1.01363 1.19273 0.89700 0.97004 1.31955 0.90881 1.24999 0.96826 0.97804 1.00010 1.70084 1.21064 1.20034 1.44199 0.86151 0.81319 0.78826 0.80086 1.20155 1.21665 1.21769 0.91113 0.91828 0.92260 0.88635 0.89720 0.79266 0.82414 0.91362 0.93555 0.95481 0.93308 0.98537 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.24 37.15 0.38 -1.48 16 2 C 0.10 1.41 6.59 -4.05 -0.03 1.38 16 3 N -0.45 -8.17 2.75 -114.00 -0.31 -8.49 16 4 C 0.15 2.74 12.55 -90.37 -1.13 1.61 16 5 N -0.50 -10.63 11.25 -14.66 -0.16 -10.80 16 6 C -0.04 -0.85 11.79 -17.81 -0.21 -1.06 16 7 C 0.00 -0.06 6.51 -81.61 -0.53 -0.59 16 8 C 0.21 4.34 5.93 -5.20 -0.03 4.31 16 9 N -0.59 -14.54 2.92 -182.51 -0.53 -15.07 16 10 C 0.16 3.86 7.75 59.85 0.46 4.33 16 11 C -0.25 -6.83 9.68 -15.06 -0.15 -6.97 16 12 H 0.07 1.96 7.87 -52.49 -0.41 1.54 16 13 C 0.00 0.05 5.09 -17.43 -0.09 -0.04 16 14 N -0.91 -26.63 10.60 55.49 0.59 -26.04 16 15 Si 0.91 22.17 29.58 -169.99 -5.03 17.14 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 20 H 0.06 0.77 7.41 -51.93 -0.38 0.39 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.10 1.54 6.04 -51.93 -0.31 1.23 16 23 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 24 H 0.19 2.64 8.06 -52.49 -0.42 2.22 16 25 H 0.16 3.25 8.06 -52.48 -0.42 2.83 16 26 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 27 H 0.05 0.83 7.00 -51.93 -0.36 0.47 16 28 H 0.03 0.70 7.14 -51.93 -0.37 0.33 16 29 H 0.05 1.26 7.18 -51.93 -0.37 0.89 16 30 H 0.00 -0.08 7.43 -51.93 -0.39 -0.46 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 261.50 15.07 3.94 3.94 Total: -1.00 -32.21 261.50 -7.10 -39.32 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.27 Total: -1.48 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.48 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.42 Total: -60.40 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.21 -7.10 -39.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237591611.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.194 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds