Wall clock time and date at job start Sun Mar 29 2020 22:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47643 * 2 1 4 4 C 1.35044 * 126.39547 * 261.83724 * 3 2 1 5 5 N 1.30504 * 108.70001 * 179.82212 * 4 3 2 6 6 C 1.34128 * 109.25097 * 0.43694 * 5 4 3 7 7 C 1.34668 * 108.02663 * 359.72807 * 6 5 4 8 8 C 1.50690 * 126.59473 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47250 * 265.15952 * 8 7 6 10 10 C 1.46498 * 119.99776 * 265.71126 * 9 8 7 11 11 C 1.36937 * 120.00115 * 85.71432 * 9 8 7 12 12 H 1.08001 * 119.99831 * 20.24727 * 11 9 8 13 13 C 1.38807 * 119.99958 * 200.25157 * 11 9 8 14 14 N 1.31625 * 120.00146 * 13.90909 * 13 11 9 15 15 Si 1.86804 * 119.99969 * 193.90935 * 13 11 9 16 16 H 1.48498 * 109.47178 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47048 * 119.99886 * 15 13 11 18 18 H 1.48495 * 109.47255 * 239.99645 * 15 13 11 19 19 H 1.08996 * 109.47440 * 174.97377 * 1 2 3 20 20 H 1.09007 * 109.47007 * 294.97436 * 1 2 3 21 21 H 1.08994 * 109.47310 * 54.97220 * 1 2 3 22 22 H 1.09003 * 109.47635 * 120.00043 * 2 1 3 23 23 H 1.08999 * 109.47060 * 240.00040 * 2 1 3 24 24 H 1.08000 * 125.65455 * 359.96659 * 4 3 2 25 25 H 1.08004 * 125.98725 * 179.72938 * 6 5 4 26 26 H 1.09003 * 109.47560 * 25.15780 * 8 7 6 27 27 H 1.09007 * 109.47545 * 145.15799 * 8 7 6 28 28 H 1.08998 * 109.46973 * 95.21106 * 10 9 8 29 29 H 1.09002 * 109.47166 * 215.20761 * 10 9 8 30 30 H 1.08992 * 109.47415 * 335.21058 * 10 9 8 31 31 H 0.96998 * 119.99884 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4311 2.0851 -1.0760 5 7 2.7889 3.2773 -0.6839 6 6 2.6282 3.3728 0.6443 7 6 2.1471 2.1972 1.0914 8 6 1.8138 1.8474 2.5188 9 7 2.9585 1.1731 3.1364 10 6 3.0286 -0.2901 3.1464 11 6 3.9628 1.9106 3.7043 12 1 3.7825 2.9351 3.9947 13 6 5.2126 1.3415 3.9067 14 7 5.5219 0.2060 3.3174 15 14 6.4555 2.1872 5.0156 16 1 5.8669 3.4398 5.5540 17 1 6.8106 1.2845 6.1400 18 1 7.6769 2.5092 4.2348 19 1 -0.3634 -1.0237 -0.0900 20 1 -0.3633 0.4339 0.9316 21 1 -0.3633 0.5898 -0.8415 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 2.4581 1.7225 -2.0930 25 1 2.8464 4.2405 1.2492 26 1 1.5867 2.7583 3.0726 27 1 0.9483 1.1851 2.5381 28 1 3.6215 -0.6313 2.2978 29 1 3.4944 -0.6252 4.0731 30 1 2.0222 -0.7026 3.0758 31 1 6.3951 -0.1919 3.4591 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237591611.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:06 Heat of formation + Delta-G solvation = 63.865528 kcal Electronic energy + Delta-G solvation = -14154.535725 eV Core-core repulsion = 11858.189263 eV Total energy + Delta-G solvation = -2296.346462 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.79748 -37.51097 -35.70136 -33.57066 -31.16390 -30.57006 -27.98558 -27.05436 -24.49680 -23.36321 -22.13375 -20.51189 -18.73573 -17.90819 -16.83742 -16.23539 -15.76820 -15.30761 -15.13427 -14.83282 -14.59317 -14.17476 -13.59421 -13.43804 -13.10220 -12.90490 -12.84337 -12.50573 -12.30871 -12.12198 -11.96507 -11.87767 -10.83271 -10.62351 -10.31681 -9.18638 -8.82704 -7.85554 -5.30229 1.30359 1.45069 1.46532 1.56255 2.11410 2.35286 2.52610 3.31004 3.80452 3.86710 3.96094 4.07913 4.18887 4.33096 4.44084 4.66880 4.74739 4.79085 4.86618 4.90835 5.15283 5.24417 5.32344 5.60138 5.64262 5.70913 5.98656 6.29563 6.55335 7.13108 7.29345 7.83159 8.24204 9.18430 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.037576 B = 0.010600 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.981985 B = 2640.999472 C = 2981.458669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 N -0.449 5.449 4 C 0.161 3.839 5 N -0.535 5.535 6 C -0.064 4.064 7 C -0.017 4.017 8 C 0.215 3.785 9 N -0.605 5.605 10 C 0.180 3.820 11 C -0.252 4.252 12 H 0.074 0.926 13 C -0.054 4.054 14 N -0.939 5.939 15 Si 0.964 3.036 16 H -0.264 1.264 17 H -0.289 1.289 18 H -0.300 1.300 19 H 0.099 0.901 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.111 0.889 24 H 0.233 0.767 25 H 0.154 0.846 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.000 1.000 29 H 0.019 0.981 30 H 0.036 0.964 31 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 -2.375 -5.529 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 N -0.133 5.133 4 C -0.121 4.121 5 N -0.254 5.254 6 C -0.212 4.212 7 C -0.136 4.136 8 C 0.088 3.912 9 N -0.327 5.327 10 C 0.035 3.965 11 C -0.382 4.382 12 H 0.091 0.909 13 C -0.248 4.248 14 N -0.586 5.586 15 Si 0.793 3.207 16 H -0.188 1.188 17 H -0.216 1.216 18 H -0.227 1.227 19 H 0.117 0.883 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.094 0.906 23 H 0.129 0.871 24 H 0.249 0.751 25 H 0.171 0.829 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.018 0.982 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.332 -2.008 -5.978 12.104 hybrid contribution 1.070 -0.239 0.922 1.433 sum -9.261 -2.247 -5.056 10.788 Atomic orbital electron populations 1.22073 0.92199 1.04303 1.02620 1.22104 0.96940 0.78923 1.05068 1.45570 1.47753 1.13084 1.06877 1.25411 1.03148 0.88522 0.94999 1.70083 1.22451 1.20206 1.12702 1.21987 1.08588 0.99082 0.91510 1.22819 1.06733 0.91773 0.92238 1.19553 0.89726 0.97644 0.84291 1.44348 1.21862 1.02329 1.64138 1.20594 0.95076 0.82193 0.98640 1.19566 0.90305 0.97091 1.31266 0.90855 1.25695 0.98677 0.98727 1.01743 1.70240 1.21103 1.21444 1.45842 0.85237 0.78810 0.78342 0.78313 1.18844 1.21567 1.22716 0.88262 0.92816 0.91681 0.90558 0.87060 0.75054 0.82865 0.90906 0.90784 0.98170 0.96248 0.94523 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 10.24 71.98 0.74 -2.19 16 2 C 0.09 2.33 6.59 86.38 0.57 2.90 16 3 N -0.45 -15.35 2.75 -514.59 -1.42 -16.77 16 4 C 0.16 5.51 12.55 180.26 2.26 7.77 16 5 N -0.54 -22.27 11.25 -200.30 -2.25 -24.52 16 6 C -0.06 -2.78 11.79 83.52 0.98 -1.80 16 7 C -0.02 -0.67 6.51 40.95 0.27 -0.41 16 8 C 0.22 8.50 5.93 85.63 0.51 9.00 16 9 N -0.61 -29.43 2.92 -731.33 -2.13 -31.56 16 10 C 0.18 8.45 7.75 127.77 0.99 9.44 16 11 C -0.25 -13.77 9.68 84.03 0.81 -12.95 16 12 H 0.07 3.92 7.87 -2.91 -0.02 3.89 16 13 C -0.05 -3.04 5.09 84.86 0.43 -2.61 16 14 N -0.94 -55.92 10.60 21.65 0.23 -55.69 16 15 Si 0.96 46.00 29.58 68.60 2.03 48.03 16 16 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 18 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 19 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.05 1.13 7.41 -2.38 -0.02 1.11 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.08 2.29 6.04 -2.39 -0.01 2.28 16 23 H 0.11 2.25 8.12 -2.39 -0.02 2.23 16 24 H 0.23 5.55 8.06 -2.91 -0.02 5.52 16 25 H 0.15 6.45 8.06 -2.91 -0.02 6.43 16 26 H 0.07 2.77 8.07 -2.39 -0.02 2.75 16 27 H 0.07 2.48 7.00 -2.38 -0.02 2.46 16 28 H 0.00 0.00 7.14 -2.39 -0.02 -0.02 16 29 H 0.02 0.99 7.18 -2.39 -0.02 0.97 16 30 H 0.04 1.39 7.43 -2.39 -0.02 1.37 16 31 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -69.47 261.50 5.12 -64.35 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.10 Total: 7.01 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 7.56 Total: 9.16 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -5.57 Total: -128.54 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -69.47 5.12 -64.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237591611.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.217 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds