Wall clock time and date at job start Sun Mar 29 2020 21:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00283 * 2 1 4 4 N 1.34777 * 119.99859 * 179.97438 * 2 1 3 5 5 C 1.47012 * 121.37534 * 0.02562 * 4 2 1 6 6 C 1.50321 * 109.16699 * 222.96484 * 5 4 2 7 7 C 1.29454 * 123.64888 * 349.28831 * 6 5 4 8 8 C 1.50703 * 117.69277 * 180.57537 * 7 6 5 9 9 C 1.50696 * 109.47149 * 94.99359 * 8 7 6 10 10 H 1.08000 * 120.00519 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99920 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99914 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00064 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47275 * 89.99675 * 13 11 9 15 15 H 1.48495 * 109.47116 * 210.00279 * 13 11 9 16 16 H 1.48506 * 109.46972 * 330.00271 * 13 11 9 17 17 C 1.49960 * 124.61719 * 0.32941 * 7 6 5 18 18 C 1.47338 * 121.37731 * 180.02562 * 4 2 1 19 19 H 1.08999 * 109.47526 * 240.00642 * 1 2 3 20 20 H 1.08998 * 109.46829 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46903 * 119.99889 * 1 2 3 22 22 H 1.09007 * 109.51749 * 103.05723 * 5 4 2 23 23 H 1.09006 * 109.51943 * 342.87666 * 5 4 2 24 24 H 1.08002 * 118.17094 * 168.99678 * 6 5 4 25 25 H 1.08995 * 109.47141 * 214.99946 * 8 7 6 26 26 H 1.09002 * 109.46515 * 334.99639 * 8 7 6 27 27 H 0.97008 * 119.99931 * 179.97438 * 12 11 9 28 28 H 1.08998 * 109.44078 * 221.06089 * 17 7 6 29 29 H 1.09005 * 109.12801 * 101.67376 * 17 7 6 30 30 H 1.09000 * 109.77686 * 237.79410 * 18 4 2 31 31 H 1.09002 * 109.77323 * 358.59849 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4766 -2.4576 0.0005 6 6 2.1518 -3.3884 0.9687 7 6 3.2962 -3.1419 1.5213 8 6 3.8564 -4.1763 2.4633 9 6 4.8010 -5.0797 1.7133 10 1 4.9784 -4.9206 0.6599 11 6 5.4389 -6.1095 2.3719 12 7 6.2636 -6.8975 1.7175 13 14 5.1316 -6.3852 4.1937 14 1 3.9866 -7.3147 4.3675 15 1 6.3448 -6.9724 4.8170 16 1 4.8190 -5.0877 4.8449 17 6 4.1064 -1.9021 1.2860 18 6 3.6538 -1.2027 0.0011 19 1 -0.3634 -0.5137 0.8900 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3633 -0.5138 -0.8900 22 1 1.5062 -2.8887 -1.0002 23 1 0.4401 -2.3069 0.3026 24 1 1.6521 -4.3121 1.2208 25 1 4.3934 -3.6791 3.2710 26 1 3.0411 -4.7681 2.8794 27 1 6.7126 -7.6218 2.1809 28 1 5.1599 -2.1681 1.1998 29 1 3.9764 -1.2250 2.1303 30 1 4.0097 -1.7582 -0.8665 31 1 4.0472 -0.1864 -0.0241 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056263.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:38 Heat of formation + Delta-G solvation = -50.393762 kcal Electronic energy + Delta-G solvation = -13632.216174 eV Core-core repulsion = 11298.622306 eV Total energy + Delta-G solvation = -2333.593868 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08514 -38.69158 -35.75674 -34.19138 -32.52674 -30.84293 -29.75216 -26.44289 -24.48614 -23.45662 -20.99490 -19.00943 -18.45240 -17.74576 -16.94608 -16.45132 -16.33704 -15.29934 -15.09679 -14.80254 -14.49962 -14.13740 -13.94310 -13.70045 -13.25150 -13.10527 -12.96238 -12.63511 -12.46377 -12.03629 -11.91208 -11.69058 -11.35086 -10.89674 -10.78202 -9.75458 -9.45165 -8.29961 -6.33877 1.34607 1.37026 1.48082 1.48534 1.63204 2.05921 2.34556 3.04759 3.65979 3.98896 4.03154 4.15881 4.26662 4.40165 4.52522 4.66560 4.67373 4.75742 4.82898 4.98750 4.99539 5.11844 5.12969 5.26328 5.45989 5.55704 5.69795 6.26990 6.30531 6.52081 6.73284 7.15280 7.29952 8.86384 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.060287 B = 0.007110 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.332362 B = 3937.376270 C = 4015.801318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.604 6.604 4 N -0.614 5.614 5 C 0.150 3.850 6 C -0.201 4.201 7 C -0.095 4.095 8 C 0.014 3.986 9 C -0.516 4.516 10 H 0.033 0.967 11 C 0.007 3.993 12 N -0.949 5.949 13 Si 0.948 3.052 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.251 1.251 17 C -0.090 4.090 18 C 0.115 3.885 19 H 0.109 0.891 20 H 0.092 0.908 21 H 0.115 0.885 22 H 0.089 0.911 23 H 0.127 0.873 24 H 0.118 0.882 25 H 0.018 0.982 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.378 9.283 -1.414 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.487 6.487 4 N -0.346 5.346 5 C 0.029 3.971 6 C -0.219 4.219 7 C -0.095 4.095 8 C -0.024 4.024 9 C -0.554 4.554 10 H 0.051 0.949 11 C -0.190 4.190 12 N -0.590 5.590 13 Si 0.771 3.229 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.174 1.174 17 C -0.128 4.128 18 C -0.008 4.008 19 H 0.128 0.872 20 H 0.111 0.889 21 H 0.133 0.867 22 H 0.107 0.893 23 H 0.145 0.855 24 H 0.135 0.865 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.973 9.681 -1.400 16.248 hybrid contribution 0.771 -0.747 0.671 1.266 sum -12.203 8.934 -0.730 15.141 Atomic orbital electron populations 1.21970 0.87664 1.06225 1.06416 1.21676 0.92568 0.81882 0.74145 1.90662 1.72252 1.32623 1.53128 1.48425 1.06915 1.06996 1.72289 1.20749 0.96954 0.80491 0.98952 1.22231 0.97625 1.00940 1.01127 1.20810 0.94976 0.95249 0.98458 1.18810 0.95543 0.93264 0.94740 1.21197 1.25093 1.12808 0.96281 0.94910 1.25957 0.94385 0.95336 1.03322 1.70054 1.30704 1.19467 1.38753 0.85694 0.78057 0.79496 0.79635 1.18898 1.21069 1.17442 1.20606 0.99744 0.94511 0.97961 1.21557 0.80562 1.01297 0.97375 0.87240 0.88881 0.86673 0.89279 0.85508 0.86465 0.96330 0.95588 0.92472 0.90956 0.91120 0.90914 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.76 71.24 0.62 -1.82 16 2 C 0.51 13.57 7.83 87.66 0.69 14.26 16 3 O -0.60 -21.71 16.57 -3.03 -0.05 -21.76 16 4 N -0.61 -16.75 2.97 -823.10 -2.44 -19.19 16 5 C 0.15 3.40 6.49 85.42 0.55 3.95 16 6 C -0.20 -6.39 9.47 27.11 0.26 -6.13 16 7 C -0.09 -3.65 5.05 -15.14 -0.08 -3.73 16 8 C 0.01 0.63 4.03 29.10 0.12 0.75 16 9 C -0.52 -29.17 9.65 25.60 0.25 -28.92 16 10 H 0.03 2.05 7.98 -2.91 -0.02 2.03 16 11 C 0.01 0.40 5.47 84.66 0.46 0.86 16 12 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 13 Si 0.95 43.66 27.47 68.60 1.88 45.55 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 17 C -0.09 -3.22 5.94 29.66 0.18 -3.04 16 18 C 0.12 3.62 6.51 86.27 0.56 4.18 16 19 H 0.11 1.23 7.57 -2.39 -0.02 1.21 16 20 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 21 H 0.11 1.11 8.13 -2.39 -0.02 1.09 16 22 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.13 1.86 6.25 -2.38 -0.01 1.84 16 24 H 0.12 3.68 7.73 -2.91 -0.02 3.66 16 25 H 0.02 0.86 7.17 -2.39 -0.02 0.84 16 26 H 0.03 1.15 7.21 -2.39 -0.02 1.14 16 27 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.09 2.75 7.07 -2.39 -0.02 2.73 16 Total: -1.00 -71.56 259.04 4.35 -67.21 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.05 Total: 6.43 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.61 Total: -19.65 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.14 Total: -77.78 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.05 Total: -21.76 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Total: -71.56 4.35 -67.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056263.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.820 kcal (2) G-P(sol) polarization free energy of solvation -71.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds