Wall clock time and date at job start Sun Mar 29 2020 21:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.39670 * 120.00324 * 2 1 4 4 C 1.38894 * 120.05851 * 0.02562 * 3 2 1 5 5 C 1.38305 * 119.89892 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.98608 * 179.97438 * 5 4 3 7 7 C 1.38537 * 120.02659 * 359.97438 * 5 4 3 8 8 C 1.38230 * 120.12344 * 0.02562 * 7 5 4 9 9 C 1.50696 * 119.95352 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.46804 * 89.99422 * 9 8 7 11 11 H 1.07995 * 120.00211 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99368 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99511 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00501 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46748 * 90.00038 * 14 12 10 16 16 H 1.48501 * 109.47196 * 210.00489 * 14 12 10 17 17 H 1.48506 * 109.47056 * 330.00483 * 14 12 10 18 18 C 1.38138 * 120.09812 * 359.96936 * 8 7 5 19 19 H 1.09004 * 109.47296 * 59.99752 * 1 2 3 20 20 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46904 * 299.99908 * 1 2 3 22 22 H 0.97003 * 120.00372 * 180.02562 * 2 1 3 23 23 H 1.08004 * 120.04736 * 0.25054 * 4 3 2 24 24 H 1.07999 * 119.93721 * 179.97438 * 7 5 4 25 25 H 1.08998 * 109.47331 * 209.99695 * 9 8 7 26 26 H 1.09004 * 109.46908 * 330.00050 * 9 8 7 27 27 H 0.97007 * 119.99875 * 179.97438 * 13 12 10 28 28 H 1.08001 * 120.01323 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1633 1.2095 0.0000 4 6 1.4702 2.4131 0.0005 5 6 2.1651 3.6089 0.0011 6 9 1.4926 4.7807 0.0011 7 6 3.5504 3.6056 0.0016 8 6 4.2413 2.4084 0.0011 9 6 5.7483 2.4093 0.0011 10 6 6.2506 2.4091 1.4220 11 1 5.5488 2.4079 2.2428 12 6 7.6062 2.4103 1.6738 13 7 8.0445 2.4096 2.9138 14 14 8.8201 2.4115 0.2541 15 1 9.1404 3.8119 -0.1220 16 1 10.0639 1.7125 0.6657 17 1 8.2208 1.7110 -0.9102 18 6 3.5524 1.2110 0.0006 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.9500 -0.8400 -0.0004 23 1 0.3901 2.4152 0.0050 24 1 4.0916 4.5402 0.0016 25 1 6.1122 1.5197 -0.5131 26 1 6.1111 3.2997 -0.5124 27 1 8.9982 2.4101 3.0911 28 1 4.0936 0.2764 0.0006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057917.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:34 Heat of formation + Delta-G solvation = -28.179466 kcal Electronic energy + Delta-G solvation = -13040.560770 eV Core-core repulsion = 10584.469881 eV Total energy + Delta-G solvation = -2456.090889 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.40178 -38.92186 -35.50858 -33.03584 -31.12155 -29.50327 -27.55676 -25.64352 -22.94287 -21.86282 -19.97912 -17.27529 -16.78498 -16.23326 -15.61639 -15.10814 -14.92787 -14.36952 -14.19396 -14.07530 -13.08274 -12.73221 -12.33237 -12.10184 -11.82344 -11.53183 -11.22473 -11.10928 -10.50558 -10.24671 -10.01836 -9.53063 -9.28832 -8.59157 -7.96537 -7.13290 -6.08108 -4.07618 1.83569 2.05176 3.28688 3.36350 3.38649 3.60221 4.30471 4.40736 4.84397 5.12005 5.24779 5.34236 5.44645 5.64893 5.66706 5.72423 6.04860 6.13565 6.50213 6.65954 6.77914 6.90039 6.98898 7.22807 7.55313 7.62782 7.69946 7.89102 8.47992 8.97397 9.51495 11.04774 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.008295 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.221971 B = 3374.843977 C = 3782.956556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.755 5.755 3 C 0.233 3.767 4 C -0.255 4.255 5 C 0.135 3.865 6 F -0.149 7.149 7 C -0.206 4.206 8 C 0.040 3.960 9 C 0.013 3.987 10 C -0.513 4.513 11 H 0.075 0.925 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.264 1.264 18 C -0.201 4.201 19 H 0.048 0.952 20 H 0.069 0.931 21 H 0.049 0.951 22 H 0.401 0.599 23 H 0.123 0.877 24 H 0.128 0.872 25 H 0.032 0.968 26 H 0.027 0.973 27 H 0.264 0.736 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 -3.562 -7.414 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.386 5.386 3 C 0.131 3.869 4 C -0.279 4.279 5 C 0.115 3.885 6 F -0.128 7.128 7 C -0.226 4.226 8 C 0.039 3.961 9 C -0.024 4.024 10 C -0.551 4.551 11 H 0.093 0.907 12 C -0.132 4.132 13 N -0.538 5.538 14 Si 0.705 3.295 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.189 1.189 18 C -0.224 4.224 19 H 0.067 0.933 20 H 0.088 0.912 21 H 0.068 0.932 22 H 0.235 0.765 23 H 0.140 0.860 24 H 0.146 0.854 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.210 -3.487 -7.298 14.646 hybrid contribution 0.712 -0.088 -0.480 0.864 sum -11.498 -3.575 -7.778 14.335 Atomic orbital electron populations 1.21463 0.80753 1.01818 1.00895 1.44332 1.05302 1.05350 1.83589 1.17440 0.90918 0.85438 0.93150 1.20206 0.99448 0.90352 1.17862 1.17375 0.90021 0.80245 1.00847 1.91427 1.80798 1.46544 1.94005 1.20839 0.91345 0.99834 1.10619 1.19829 0.97473 0.90702 0.88075 1.18860 0.86963 0.97694 0.98887 1.20893 0.92548 1.51397 0.90265 0.90682 1.24989 0.98212 0.94459 0.95527 1.69902 1.14529 1.50589 1.18731 0.86807 0.80837 0.78709 0.83181 1.20100 1.21254 1.18879 1.20549 0.91051 0.99022 1.11750 0.93294 0.91223 0.93218 0.76480 0.85952 0.85366 0.95033 0.95441 0.92566 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 9.94 59.84 0.59 1.53 15 2 N -0.75 -9.68 5.89 -65.41 -0.39 -10.06 15 3 C 0.23 3.87 6.65 -83.80 -0.56 3.31 15 4 C -0.26 -4.29 9.29 -39.31 -0.37 -4.66 15 5 C 0.13 2.50 7.30 -39.45 -0.29 2.21 15 6 F -0.15 -2.67 17.27 2.25 0.04 -2.63 15 7 C -0.21 -4.16 9.68 -39.47 -0.38 -4.54 15 8 C 0.04 0.85 5.07 -104.66 -0.53 0.32 15 9 C 0.01 0.31 4.17 -29.03 -0.12 0.19 15 10 C -0.51 -14.50 9.65 -34.44 -0.33 -14.83 15 11 H 0.08 2.33 7.98 -52.49 -0.42 1.91 15 12 C 0.07 2.00 5.47 -17.82 -0.10 1.91 15 13 N -0.90 -27.45 13.96 55.43 0.77 -26.67 15 14 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 15 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 17 H -0.26 -6.06 6.54 56.52 0.37 -5.69 15 18 C -0.20 -3.80 9.55 -39.37 -0.38 -4.18 15 19 H 0.05 0.46 7.95 -51.93 -0.41 0.05 15 20 H 0.07 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.05 0.50 7.94 -51.93 -0.41 0.08 15 22 H 0.40 4.45 8.84 -40.82 -0.36 4.09 15 23 H 0.12 1.78 6.73 -52.48 -0.35 1.42 15 24 H 0.13 2.53 8.06 -52.49 -0.42 2.11 15 25 H 0.03 0.73 7.14 -51.93 -0.37 0.36 15 26 H 0.03 0.64 7.51 -51.93 -0.39 0.25 15 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 28 H 0.12 2.20 8.06 -52.49 -0.42 1.77 15 LS Contribution 248.76 15.07 3.75 3.75 Total: -1.00 -30.74 248.76 -6.10 -36.84 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.15 Total: 1.02 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.45 Total: -18.73 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.39 Total: -36.74 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.74 -6.10 -36.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057917.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.660 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds