Wall clock time and date at job start Sun Mar 29 2020 21:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.39670 * 120.00324 * 2 1 4 4 C 1.38894 * 120.05851 * 0.02562 * 3 2 1 5 5 C 1.38305 * 119.89892 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.98608 * 179.97438 * 5 4 3 7 7 C 1.38537 * 120.02659 * 359.97438 * 5 4 3 8 8 C 1.38230 * 120.12344 * 0.02562 * 7 5 4 9 9 C 1.50696 * 119.95352 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.46804 * 89.99422 * 9 8 7 11 11 H 1.07995 * 120.00211 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99368 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99511 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00501 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46748 * 90.00038 * 14 12 10 16 16 H 1.48501 * 109.47196 * 210.00489 * 14 12 10 17 17 H 1.48506 * 109.47056 * 330.00483 * 14 12 10 18 18 C 1.38138 * 120.09812 * 359.96936 * 8 7 5 19 19 H 1.09004 * 109.47296 * 59.99752 * 1 2 3 20 20 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46904 * 299.99908 * 1 2 3 22 22 H 0.97003 * 120.00372 * 180.02562 * 2 1 3 23 23 H 1.08004 * 120.04736 * 0.25054 * 4 3 2 24 24 H 1.07999 * 119.93721 * 179.97438 * 7 5 4 25 25 H 1.08998 * 109.47331 * 209.99695 * 9 8 7 26 26 H 1.09004 * 109.46908 * 330.00050 * 9 8 7 27 27 H 0.97007 * 119.99875 * 179.97438 * 13 12 10 28 28 H 1.08001 * 120.01323 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1633 1.2095 0.0000 4 6 1.4702 2.4131 0.0005 5 6 2.1651 3.6089 0.0011 6 9 1.4926 4.7807 0.0011 7 6 3.5504 3.6056 0.0016 8 6 4.2413 2.4084 0.0011 9 6 5.7483 2.4093 0.0011 10 6 6.2506 2.4091 1.4220 11 1 5.5488 2.4079 2.2428 12 6 7.6062 2.4103 1.6738 13 7 8.0445 2.4096 2.9138 14 14 8.8201 2.4115 0.2541 15 1 9.1404 3.8119 -0.1220 16 1 10.0639 1.7125 0.6657 17 1 8.2208 1.7110 -0.9102 18 6 3.5524 1.2110 0.0006 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.9500 -0.8400 -0.0004 23 1 0.3901 2.4152 0.0050 24 1 4.0916 4.5402 0.0016 25 1 6.1122 1.5197 -0.5131 26 1 6.1111 3.2997 -0.5124 27 1 8.9982 2.4101 3.0911 28 1 4.0936 0.2764 0.0006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057917.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:34 Heat of formation + Delta-G solvation = -47.922927 kcal Electronic energy + Delta-G solvation = -13041.416910 eV Core-core repulsion = 10584.469881 eV Total energy + Delta-G solvation = -2456.947030 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.83988 -40.31108 -36.81807 -34.99198 -32.88118 -30.79823 -29.31847 -26.73402 -24.78447 -23.28767 -21.50823 -18.96186 -18.61387 -17.58708 -17.03698 -16.54905 -16.33810 -16.16846 -15.51188 -15.03014 -14.89986 -14.26994 -14.12058 -13.42119 -13.28046 -12.98254 -12.72069 -12.59854 -12.30194 -11.97389 -11.74154 -11.55713 -10.79190 -10.76164 -9.49248 -8.37973 -8.28510 -6.34130 0.36989 0.60113 1.39641 1.40629 1.52760 2.37207 2.52641 2.83399 3.05790 3.43301 3.94568 4.22234 4.26158 4.42143 4.58640 4.70790 4.71793 4.95367 5.00078 5.10003 5.11055 5.28174 5.34079 5.56558 5.82373 5.96576 6.26681 6.40278 6.71963 6.83780 7.29102 8.88082 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.008295 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.221971 B = 3374.843977 C = 3782.956556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.745 5.745 3 C 0.243 3.757 4 C -0.249 4.249 5 C 0.132 3.868 6 F -0.146 7.146 7 C -0.229 4.229 8 C 0.014 3.986 9 C 0.019 3.981 10 C -0.520 4.520 11 H 0.028 0.972 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.951 3.049 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.241 1.241 18 C -0.213 4.213 19 H 0.057 0.943 20 H 0.101 0.899 21 H 0.050 0.950 22 H 0.410 0.590 23 H 0.151 0.849 24 H 0.121 0.879 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.268 0.732 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.357 -4.626 -9.192 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.375 5.375 3 C 0.138 3.862 4 C -0.273 4.273 5 C 0.113 3.887 6 F -0.125 7.125 7 C -0.250 4.250 8 C 0.013 3.987 9 C -0.018 4.018 10 C -0.558 4.558 11 H 0.046 0.954 12 C -0.189 4.189 13 N -0.590 5.590 14 Si 0.774 3.226 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.165 1.165 18 C -0.235 4.235 19 H 0.075 0.925 20 H 0.120 0.880 21 H 0.069 0.931 22 H 0.246 0.754 23 H 0.169 0.831 24 H 0.139 0.861 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.485 -4.585 -9.087 16.895 hybrid contribution 0.919 0.189 0.150 0.950 sum -12.566 -4.396 -8.937 16.034 Atomic orbital electron populations 1.21745 0.78437 1.04203 1.01258 1.44519 1.06797 1.04379 1.81795 1.17448 0.90275 0.86947 0.91545 1.20474 1.00807 0.89551 1.16438 1.17418 0.89523 0.81024 1.00785 1.91430 1.80532 1.46559 1.93980 1.20815 0.92421 0.99333 1.12405 1.19680 0.96267 0.92121 0.90629 1.18712 0.89096 0.98127 0.95887 1.21107 0.92143 1.50999 0.91572 0.95399 1.25981 1.00437 0.93874 0.98566 1.70062 1.15219 1.52238 1.21465 0.85641 0.77801 0.79337 0.79818 1.19198 1.20833 1.16460 1.20636 0.92371 0.98398 1.12134 0.92478 0.88046 0.93130 0.75397 0.83148 0.86125 0.94090 0.94914 0.92326 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 9.94 127.77 1.27 2.62 15 2 N -0.75 -16.69 5.89 -360.85 -2.12 -18.82 15 3 C 0.24 7.55 6.65 38.21 0.25 7.80 15 4 C -0.25 -7.81 9.29 22.44 0.21 -7.60 15 5 C 0.13 4.79 7.30 22.36 0.16 4.95 15 6 F -0.15 -5.09 17.27 44.97 0.78 -4.31 15 7 C -0.23 -9.35 9.68 22.34 0.22 -9.14 15 8 C 0.01 0.60 5.07 -19.89 -0.10 0.50 15 9 C 0.02 0.90 4.17 29.10 0.12 1.03 15 10 C -0.52 -30.31 9.65 25.60 0.25 -30.06 15 11 H 0.03 1.82 7.98 -2.91 -0.02 1.80 15 12 C 0.01 0.49 5.47 84.65 0.46 0.95 15 13 N -0.95 -59.67 13.96 21.45 0.30 -59.37 15 14 Si 0.95 43.55 27.47 68.60 1.88 45.43 15 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 17 H -0.24 -10.08 6.54 99.48 0.65 -9.43 15 18 C -0.21 -7.87 9.55 22.41 0.21 -7.66 15 19 H 0.06 0.83 7.95 -2.39 -0.02 0.82 15 20 H 0.10 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.05 0.81 7.94 -2.39 -0.02 0.79 15 22 H 0.41 7.81 8.84 -92.71 -0.82 6.99 15 23 H 0.15 3.82 6.73 -2.91 -0.02 3.80 15 24 H 0.12 4.93 8.06 -2.91 -0.02 4.91 15 25 H 0.04 1.85 7.14 -2.39 -0.02 1.83 15 26 H 0.03 1.50 7.51 -2.38 -0.02 1.49 15 27 H 0.27 15.62 8.31 -92.70 -0.77 14.85 15 28 H 0.13 4.49 8.06 -2.91 -0.02 4.47 15 Total: -1.00 -67.66 248.76 4.18 -63.48 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.29 Total: 10.19 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.06 Total: -36.60 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.83 Total: -78.19 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.78 Total: -4.31 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Total: -67.66 4.18 -63.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057917.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.556 kcal (2) G-P(sol) polarization free energy of solvation -67.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds