Wall clock time and date at job start Sun Mar 29 2020 21:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38152 * 120.38589 * 2 1 4 4 N 1.31903 * 120.79488 * 179.97438 * 3 2 1 5 5 C 1.32057 * 121.69089 * 359.97438 * 4 3 2 6 6 F 1.35101 * 119.65256 * 180.02562 * 5 4 3 7 7 C 1.38521 * 120.70088 * 0.02562 * 5 4 3 8 8 C 1.38545 * 119.13835 * 0.25994 * 7 5 4 9 9 C 1.50691 * 120.77555 * 179.72312 * 8 7 5 10 10 C 1.53004 * 109.47183 * 264.99406 * 9 8 7 11 11 C 1.50696 * 109.47153 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00283 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99790 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00237 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99815 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46960 * 90.00439 * 15 13 11 17 17 H 1.48499 * 109.46798 * 209.99902 * 15 13 11 18 18 H 1.48497 * 109.47241 * 329.99969 * 15 13 11 19 19 H 1.09007 * 109.46615 * 90.00357 * 1 2 3 20 20 H 1.08992 * 109.47016 * 209.99745 * 1 2 3 21 21 H 1.08999 * 109.47497 * 330.00075 * 1 2 3 22 22 H 1.08002 * 119.60326 * 359.97303 * 3 2 1 23 23 H 1.08002 * 120.42843 * 179.97438 * 7 5 4 24 24 H 1.09006 * 109.47641 * 24.99334 * 9 8 7 25 25 H 1.08998 * 109.47583 * 144.99201 * 9 8 7 26 26 H 1.08998 * 109.47153 * 299.99938 * 10 9 8 27 27 H 1.09003 * 109.46984 * 59.99934 * 10 9 8 28 28 H 0.96998 * 119.99936 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1917 0.0000 4 7 3.5248 1.2012 0.0005 5 6 4.2265 0.0825 0.0015 6 9 5.5763 0.1402 0.0025 7 6 3.5934 -1.1496 0.0016 8 6 2.2087 -1.1964 -0.0049 9 6 1.4820 -2.5165 -0.0114 10 6 1.1324 -2.8992 -1.4509 11 6 0.4062 -4.2196 -1.4574 12 1 0.2128 -4.7342 -0.5278 13 6 -0.0124 -4.7703 -2.6501 14 7 0.2225 -4.1435 -3.7822 15 14 -0.9133 -6.4068 -2.6581 16 1 -2.3744 -6.1680 -2.5418 17 1 -0.6283 -7.1224 -3.9277 18 1 -0.4534 -7.2306 -1.5114 19 1 -0.3633 -0.0001 -1.0278 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6656 2.1270 -0.0004 23 1 4.1716 -2.0617 0.0020 24 1 2.1206 -3.2851 0.4240 25 1 0.5667 -2.4303 0.5741 26 1 0.4937 -2.1307 -1.8863 27 1 2.0478 -2.9856 -2.0364 28 1 -0.0723 -4.5307 -4.6212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059912.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:56 Heat of formation + Delta-G solvation = -31.981586 kcal Electronic energy + Delta-G solvation = -13072.164310 eV Core-core repulsion = 10615.908549 eV Total energy + Delta-G solvation = -2456.255761 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.74043 -40.00322 -35.03636 -32.90204 -32.01284 -29.88387 -26.83351 -25.58427 -22.94843 -21.93180 -20.40665 -17.26290 -17.18247 -16.30055 -15.78933 -15.00900 -14.56367 -14.19623 -13.85972 -13.59957 -12.82077 -12.72683 -12.23229 -12.12706 -11.97494 -11.58704 -11.26914 -10.97888 -10.73940 -10.02700 -9.96984 -9.45903 -9.20022 -8.96121 -8.47842 -8.44238 -6.08902 -4.12924 1.17395 1.43685 3.26533 3.33564 3.36192 3.81132 3.85939 4.38375 4.76460 5.00113 5.10914 5.16612 5.27193 5.59305 5.79691 5.89963 5.96162 6.01954 6.19849 6.33510 6.49890 6.71880 6.76054 6.98245 7.54749 7.64459 7.86194 7.88793 8.27772 8.93460 9.52034 11.02061 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.045940 B = 0.007217 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.340105 B = 3878.669760 C = 4180.318470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.146 4.146 3 C 0.128 3.872 4 N -0.526 5.526 5 C 0.292 3.708 6 F -0.121 7.121 7 C -0.191 4.191 8 C 0.008 3.992 9 C -0.084 4.084 10 C 0.031 3.969 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.161 0.839 23 H 0.145 0.855 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.018 0.982 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 7.027 7.459 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C -0.029 4.029 4 N -0.241 5.241 5 C 0.139 3.861 6 F -0.100 7.100 7 C -0.212 4.212 8 C 0.001 3.999 9 C -0.121 4.121 10 C -0.006 4.006 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 H 0.098 0.902 20 H 0.096 0.904 21 H 0.082 0.918 22 H 0.178 0.822 23 H 0.163 0.837 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.377 7.796 7.266 10.919 hybrid contribution -0.499 -1.617 -0.231 1.708 sum 1.878 6.179 7.035 9.550 Atomic orbital electron populations 1.20748 0.89622 1.02858 1.03374 1.20872 0.98282 0.93206 1.02450 1.22286 0.87439 0.97843 0.95296 1.66909 1.09671 1.30560 1.16932 1.18098 0.78262 0.90201 0.99574 1.91575 1.27801 1.97059 1.93583 1.21758 0.95618 0.97517 1.06282 1.20596 0.92342 0.97127 0.89879 1.20989 0.98659 0.89859 1.02634 1.19065 0.96973 0.96563 0.87981 1.21185 1.36976 1.05273 0.92870 0.92457 1.25014 0.96032 0.97606 0.95605 1.69962 1.46573 1.38897 0.97736 0.86577 0.80034 0.83788 0.77516 1.20591 1.21188 1.19809 0.90232 0.90371 0.91821 0.82158 0.83744 0.91512 0.90861 0.96037 0.96387 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.60 36.01 0.35 -1.12 15 2 C -0.15 -2.27 5.90 -104.48 -0.62 -2.89 15 3 C 0.13 1.88 10.86 -17.55 -0.19 1.69 15 4 N -0.53 -8.94 10.37 -13.59 -0.14 -9.09 15 5 C 0.29 5.00 8.41 -17.35 -0.15 4.86 15 6 F -0.12 -2.02 17.29 2.25 0.04 -1.98 15 7 C -0.19 -3.21 9.77 -39.36 -0.38 -3.59 15 8 C 0.01 0.14 5.17 -104.34 -0.54 -0.40 15 9 C -0.08 -1.60 4.86 -27.89 -0.14 -1.74 15 10 C 0.03 0.76 4.95 -27.88 -0.14 0.63 15 11 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 15 12 H 0.06 1.48 7.74 -52.48 -0.41 1.07 15 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 14 N -0.89 -26.09 13.29 55.43 0.74 -25.36 15 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 15 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 19 H 0.08 1.14 8.14 -51.92 -0.42 0.72 15 20 H 0.08 1.08 6.16 -51.93 -0.32 0.76 15 21 H 0.06 0.66 8.09 -51.93 -0.42 0.24 15 22 H 0.16 1.80 8.06 -52.49 -0.42 1.37 15 23 H 0.14 2.22 8.06 -52.49 -0.42 1.79 15 24 H 0.07 1.23 8.07 -51.93 -0.42 0.81 15 25 H 0.07 1.31 6.28 -51.93 -0.33 0.98 15 26 H 0.02 0.55 8.09 -51.93 -0.42 0.13 15 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 251.05 15.07 3.78 3.78 Total: -1.00 -29.58 251.05 -5.96 -35.53 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -3.14 Total: -3.38 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.22 Total: -15.42 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.60 Total: -34.44 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.58 -5.96 -35.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059912.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.551 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds