Wall clock time and date at job start Sun Mar 29 2020 21:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38152 * 120.38589 * 2 1 4 4 N 1.31903 * 120.79488 * 179.97438 * 3 2 1 5 5 C 1.32057 * 121.69089 * 359.97438 * 4 3 2 6 6 F 1.35101 * 119.65256 * 180.02562 * 5 4 3 7 7 C 1.38521 * 120.70088 * 0.02562 * 5 4 3 8 8 C 1.38545 * 119.13835 * 0.25994 * 7 5 4 9 9 C 1.50691 * 120.77555 * 179.72312 * 8 7 5 10 10 C 1.53004 * 109.47183 * 264.99406 * 9 8 7 11 11 C 1.50696 * 109.47153 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00283 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99790 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00237 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99815 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46960 * 90.00439 * 15 13 11 17 17 H 1.48499 * 109.46798 * 209.99902 * 15 13 11 18 18 H 1.48497 * 109.47241 * 329.99969 * 15 13 11 19 19 H 1.09007 * 109.46615 * 90.00357 * 1 2 3 20 20 H 1.08992 * 109.47016 * 209.99745 * 1 2 3 21 21 H 1.08999 * 109.47497 * 330.00075 * 1 2 3 22 22 H 1.08002 * 119.60326 * 359.97303 * 3 2 1 23 23 H 1.08002 * 120.42843 * 179.97438 * 7 5 4 24 24 H 1.09006 * 109.47641 * 24.99334 * 9 8 7 25 25 H 1.08998 * 109.47583 * 144.99201 * 9 8 7 26 26 H 1.08998 * 109.47153 * 299.99938 * 10 9 8 27 27 H 1.09003 * 109.46984 * 59.99934 * 10 9 8 28 28 H 0.96998 * 119.99936 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1917 0.0000 4 7 3.5248 1.2012 0.0005 5 6 4.2265 0.0825 0.0015 6 9 5.5763 0.1402 0.0025 7 6 3.5934 -1.1496 0.0016 8 6 2.2087 -1.1964 -0.0049 9 6 1.4820 -2.5165 -0.0114 10 6 1.1324 -2.8992 -1.4509 11 6 0.4062 -4.2196 -1.4574 12 1 0.2128 -4.7342 -0.5278 13 6 -0.0124 -4.7703 -2.6501 14 7 0.2225 -4.1435 -3.7822 15 14 -0.9133 -6.4068 -2.6581 16 1 -2.3744 -6.1680 -2.5418 17 1 -0.6283 -7.1224 -3.9277 18 1 -0.4534 -7.2306 -1.5114 19 1 -0.3633 -0.0001 -1.0278 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6656 2.1270 -0.0004 23 1 4.1716 -2.0617 0.0020 24 1 2.1206 -3.2851 0.4240 25 1 0.5667 -2.4303 0.5741 26 1 0.4937 -2.1307 -1.8863 27 1 2.0478 -2.9856 -2.0364 28 1 -0.0723 -4.5307 -4.6212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059912.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:56 Heat of formation + Delta-G solvation = -49.039978 kcal Electronic energy + Delta-G solvation = -13072.904017 eV Core-core repulsion = 10615.908549 eV Total energy + Delta-G solvation = -2456.995469 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.04693 -41.28230 -36.60582 -34.73042 -33.32214 -31.59358 -28.09906 -27.30810 -24.47804 -23.39534 -21.94262 -18.77705 -18.52183 -18.15668 -17.11262 -16.51419 -16.23929 -15.46439 -15.25265 -14.89331 -14.42007 -14.34690 -13.93756 -13.38496 -13.27919 -13.08581 -12.77059 -12.66638 -12.52352 -11.83692 -11.71473 -11.30332 -10.64962 -10.54715 -10.45467 -9.72662 -8.19325 -6.30621 -0.08737 0.12137 1.43014 1.43727 1.54557 2.41500 2.54980 2.60087 3.15088 3.49534 3.77313 3.88098 3.93550 4.38567 4.46111 4.69961 4.71082 4.76256 4.92109 4.94860 5.11046 5.22669 5.39026 5.50613 5.69211 5.72686 5.84348 6.21338 6.60856 6.86207 7.39317 8.92245 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.045940 B = 0.007217 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.340105 B = 3878.669760 C = 4180.318470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.144 4.144 3 C 0.134 3.866 4 N -0.539 5.539 5 C 0.278 3.722 6 F -0.122 7.122 7 C -0.194 4.194 8 C -0.012 4.012 9 C -0.070 4.070 10 C 0.038 3.962 11 C -0.540 4.540 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.963 3.037 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.262 1.262 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.101 0.899 22 H 0.202 0.798 23 H 0.152 0.848 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.002 0.998 27 H -0.015 1.015 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 7.252 8.556 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.146 4.146 3 C -0.023 4.023 4 N -0.253 5.253 5 C 0.125 3.875 6 F -0.101 7.101 7 C -0.215 4.215 8 C -0.020 4.020 9 C -0.107 4.107 10 C 0.001 3.999 11 C -0.578 4.578 12 H 0.084 0.916 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.186 1.186 19 H 0.087 0.913 20 H 0.091 0.909 21 H 0.120 0.880 22 H 0.218 0.782 23 H 0.170 0.830 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.020 0.980 27 H 0.003 0.997 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.450 8.020 8.385 11.693 hybrid contribution -0.202 -1.619 -0.570 1.729 sum 1.249 6.400 7.815 10.178 Atomic orbital electron populations 1.20793 0.88042 1.04519 1.03070 1.21171 0.99467 0.92839 1.01164 1.22924 0.86747 0.99111 0.93474 1.66989 1.10746 1.30489 1.17114 1.18190 0.78385 0.90466 1.00419 1.91565 1.27843 1.97077 1.93664 1.21846 0.95691 0.97926 1.06072 1.20531 0.92631 0.97076 0.91761 1.20704 0.99669 0.91111 0.99183 1.18881 0.94748 0.95381 0.90908 1.21661 1.36647 1.06221 0.93246 0.91560 1.25932 0.96963 1.01409 0.95254 1.70099 1.48036 1.40826 0.98420 0.85481 0.78942 0.79207 0.77628 1.19653 1.21281 1.18624 0.91337 0.90922 0.88038 0.78162 0.83033 0.91086 0.89451 0.97986 0.99667 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.64 9.60 71.24 0.68 -1.96 15 2 C -0.14 -4.23 5.90 -19.77 -0.12 -4.34 15 3 C 0.13 3.60 10.86 84.66 0.92 4.52 15 4 N -0.54 -17.43 10.37 -196.92 -2.04 -19.47 15 5 C 0.28 9.34 8.41 84.73 0.71 10.05 15 6 F -0.12 -4.03 17.29 44.97 0.78 -3.25 15 7 C -0.19 -6.47 9.77 22.41 0.22 -6.25 15 8 C -0.01 -0.42 5.17 -19.68 -0.10 -0.52 15 9 C -0.07 -2.62 4.86 29.85 0.15 -2.47 15 10 C 0.04 1.89 4.95 29.85 0.15 2.04 15 11 C -0.54 -28.98 9.11 25.60 0.23 -28.75 15 12 H 0.07 3.36 7.74 -2.91 -0.02 3.33 15 13 C 0.00 0.13 5.46 84.65 0.46 0.59 15 14 N -0.93 -55.41 13.29 21.45 0.28 -55.13 15 15 Si 0.96 42.64 29.54 68.60 2.03 44.67 15 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 17 H -0.29 -12.66 7.11 99.48 0.71 -11.95 15 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 19 H 0.07 1.87 8.14 -2.38 -0.02 1.85 15 20 H 0.07 1.87 6.16 -2.39 -0.01 1.86 15 21 H 0.10 1.71 8.09 -2.39 -0.02 1.69 15 22 H 0.20 3.65 8.06 -2.91 -0.02 3.63 15 23 H 0.15 4.66 8.06 -2.91 -0.02 4.64 15 24 H 0.07 2.57 8.07 -2.38 -0.02 2.55 15 25 H 0.09 3.01 6.28 -2.39 -0.02 3.00 15 26 H 0.00 0.09 8.09 -2.39 -0.02 0.07 15 27 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 15 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 15 Total: -1.00 -63.19 251.05 5.51 -57.68 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.15 Total: 2.59 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 3.30 Total: -27.09 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.76 Total: -74.60 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -63.19 5.51 -57.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059912.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.645 kcal (2) G-P(sol) polarization free energy of solvation -63.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds