Wall clock time and date at job start Sun Mar 29 2020 21:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30179 * 126.80007 * 2 1 4 4 O 1.20921 * 111.60475 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.56808 * 359.76982 * 4 3 2 6 6 C 1.50701 * 126.77786 * 180.28125 * 5 4 3 7 7 C 1.35450 * 106.44586 * 0.37708 * 5 4 3 8 8 C 1.50697 * 128.00883 * 179.91101 * 7 5 4 9 9 C 1.52997 * 109.47466 * 269.67776 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46725 * 60.00489 * 15 13 11 17 17 H 1.48505 * 109.46988 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47116 * 300.00464 * 15 13 11 19 19 H 1.09000 * 109.47103 * 269.96753 * 1 2 3 20 20 H 1.08994 * 109.47245 * 29.97500 * 1 2 3 21 21 H 1.09005 * 109.46560 * 149.97336 * 1 2 3 22 22 H 1.09004 * 109.47130 * 270.10876 * 6 5 4 23 23 H 1.08995 * 109.47389 * 30.11147 * 6 5 4 24 24 H 1.08996 * 109.46909 * 150.11487 * 6 5 4 25 25 H 1.09002 * 109.47120 * 149.67529 * 8 7 5 26 26 H 1.08998 * 109.46862 * 29.68331 * 8 7 5 27 27 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 29 29 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 30 30 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 31 31 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9022 -1.3694 0.0109 7 6 2.3540 -1.1320 -0.0008 8 6 1.9592 -2.5863 -0.0005 9 6 1.8242 -3.0786 -1.4428 10 6 1.4227 -4.5549 -1.4424 11 6 1.2892 -5.0396 -2.8631 12 1 1.4728 -4.3624 -3.6841 13 6 0.9337 -6.3477 -3.1147 14 7 0.7106 -7.1725 -2.1149 15 14 0.7675 -6.9483 -4.8758 16 1 2.0662 -6.7880 -5.5780 17 1 0.3779 -8.3813 -4.8754 18 1 -0.2741 -6.1528 -5.5738 19 1 -0.3633 -0.0006 1.0277 20 1 -0.3633 0.8901 -0.5134 21 1 -0.3632 -0.8898 -0.5143 22 1 5.2202 -1.5547 -1.0151 23 1 5.6637 -0.7850 0.5273 24 1 4.7629 -2.3201 0.5254 25 1 1.0056 -2.7038 0.5143 26 1 2.7233 -3.1701 0.5127 27 1 2.7779 -2.9611 -1.9575 28 1 1.0601 -2.4947 -1.9559 29 1 2.1866 -5.1391 -0.9291 30 1 0.4691 -4.6720 -0.9278 31 1 0.4609 -8.0929 -2.2919 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:13 Heat of formation + Delta-G solvation = 25.568501 kcal Electronic energy + Delta-G solvation = -13374.822714 eV Core-core repulsion = 11044.522816 eV Total energy + Delta-G solvation = -2330.299897 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.66827 -36.01255 -33.88265 -33.22326 -31.57485 -28.57508 -28.20404 -26.68342 -23.83453 -21.29561 -20.20695 -19.76091 -17.40877 -16.73530 -16.15575 -14.61784 -14.52605 -13.98521 -13.35950 -13.26306 -13.06690 -12.80487 -12.56891 -12.28912 -12.15052 -11.84850 -11.41534 -10.91645 -10.81133 -10.63287 -10.52165 -9.69968 -9.66895 -9.39027 -9.16436 -8.66866 -8.35696 -6.01029 -4.03393 1.68616 2.45654 3.32549 3.33923 3.36960 3.39704 4.40422 4.45531 4.67452 5.09940 5.26403 5.34758 5.43894 5.50101 5.60692 5.63683 5.81169 5.91606 6.01207 6.03868 6.08310 6.22063 6.50596 6.71747 6.85847 7.09897 7.66039 7.80283 7.98990 8.41982 8.49526 9.03547 9.60796 11.10213 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044616 B = 0.006413 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.433688 B = 4365.272054 C = 4580.082707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 N -0.377 5.377 4 O 0.089 5.911 5 C -0.045 4.045 6 C -0.070 4.070 7 C -0.181 4.181 8 C -0.045 4.045 9 C -0.103 4.103 10 C 0.022 3.978 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 10.705 5.278 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 N -0.084 5.084 4 O 0.024 5.976 5 C -0.108 4.108 6 C -0.127 4.127 7 C -0.185 4.185 8 C -0.083 4.083 9 C -0.140 4.140 10 C -0.015 4.015 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 H 0.095 0.905 20 H 0.091 0.909 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.057 11.840 5.317 13.599 hybrid contribution -0.223 -1.175 -0.994 1.555 sum 3.834 10.665 4.323 12.130 Atomic orbital electron populations 1.20172 0.86159 1.03952 1.03087 1.23477 0.98895 0.88677 1.02762 1.73766 0.89440 1.24178 1.20980 1.84726 1.21569 1.22824 1.68466 1.24210 0.98446 0.83490 1.04693 1.20297 0.89777 0.98514 1.04133 1.21312 0.91316 0.98424 1.07398 1.20131 1.01571 0.86505 1.00116 1.21618 1.00459 0.99692 0.92258 1.19106 0.96646 0.88799 0.96985 1.21226 1.46563 0.95610 0.92587 0.92814 1.25012 0.95444 0.96948 0.96967 1.69947 1.47512 1.05413 1.30672 0.86678 0.78574 0.77681 0.85200 1.20243 1.21255 1.20259 0.90460 0.90903 0.89444 0.89457 0.90411 0.88930 0.90987 0.91013 0.93360 0.93394 0.96531 0.96541 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.39 36.00 0.37 -0.61 16 2 C 0.02 0.33 7.33 -82.10 -0.60 -0.28 16 3 N -0.38 -6.30 12.07 33.42 0.40 -5.89 16 4 O 0.09 1.39 11.20 17.17 0.19 1.59 16 5 C -0.05 -0.66 7.49 -35.30 -0.26 -0.92 16 6 C -0.07 -0.74 10.30 36.01 0.37 -0.37 16 7 C -0.18 -2.88 5.58 -104.42 -0.58 -3.46 16 8 C -0.05 -0.76 5.54 -27.89 -0.15 -0.91 16 9 C -0.10 -2.07 5.13 -26.73 -0.14 -2.21 16 10 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 11 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 20 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 21 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.94 7.43 -51.93 -0.39 0.55 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.12 7.44 -51.93 -0.39 0.74 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 271.06 15.07 4.08 4.08 Total: -1.00 -31.07 271.06 -5.69 -36.76 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: -4.54 Total: -5.30 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.54 Total: -21.82 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 1.14 Total: -31.85 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.07 -5.69 -36.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.328 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds