Wall clock time and date at job start Sun Mar 29 2020 21:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00189 * 2 1 4 4 H 1.48500 * 109.46988 * 269.99436 * 3 2 1 5 5 H 1.48500 * 109.47354 * 29.99724 * 3 2 1 6 6 H 1.48503 * 109.47066 * 149.99752 * 3 2 1 7 7 C 1.38816 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00045 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99574 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.07540 * 326.46201 * 10 9 7 12 12 C 1.54191 * 110.05211 * 87.92643 * 10 9 7 13 13 C 1.54526 * 104.50948 * 143.62523 * 12 10 9 14 14 H 1.09000 * 112.35052 * 200.30635 * 13 12 10 15 15 C 1.53787 * 110.07500 * 72.64767 * 13 12 10 16 16 C 1.51362 * 107.19400 * 228.81468 * 15 13 12 17 17 O 1.20763 * 126.31696 * 178.93764 * 16 15 13 18 18 C 1.52608 * 107.79317 * 359.75600 * 16 15 13 19 19 C 1.54701 * 104.42314 * 22.36520 * 18 16 15 20 20 H 1.09002 * 113.39718 * 201.45036 * 19 18 16 21 21 C 1.53864 * 110.04883 * 205.00067 * 10 9 7 22 22 H 0.97003 * 119.99384 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00420 * 359.97438 * 9 7 2 24 24 H 1.09005 * 110.42996 * 262.37636 * 12 10 9 25 25 H 1.08997 * 110.43314 * 24.86322 * 12 10 9 26 26 H 1.08998 * 109.89616 * 348.21416 * 15 13 12 27 27 H 1.09004 * 109.89363 * 109.42434 * 15 13 12 28 28 H 1.09004 * 109.92608 * 263.97430 * 18 16 15 29 29 H 1.09001 * 111.20823 * 141.39291 * 18 16 15 30 30 H 1.08997 * 109.92936 * 120.14631 * 21 10 9 31 31 H 1.08997 * 109.92410 * 358.80330 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9845 -3.5545 -0.5633 12 6 2.3665 -4.0879 1.4496 13 6 2.2292 -5.6269 1.4330 14 1 2.0705 -6.0397 2.4293 15 6 3.4195 -6.2551 0.6890 16 6 2.8532 -7.2460 -0.3052 17 8 3.4856 -7.9201 -1.0824 18 6 1.3335 -7.2288 -0.1668 19 6 1.0203 -5.8548 0.4715 20 1 0.0524 -5.8205 0.9717 21 6 1.1876 -4.7689 -0.6094 22 1 -0.4849 0.8401 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 3.3811 -3.7995 1.7244 25 1 1.6454 -3.6490 2.1391 26 1 3.9789 -5.4810 0.1637 27 1 4.0693 -6.7700 1.3967 28 1 1.0114 -8.0354 0.4918 29 1 0.8480 -7.3150 -1.1389 30 1 1.6825 -5.1892 -1.4848 31 1 0.2129 -4.3676 -0.8868 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254922188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:08 Heat of formation + Delta-G solvation = -40.201455 kcal Electronic energy + Delta-G solvation = -13846.058455 eV Core-core repulsion = 11512.906558 eV Total energy + Delta-G solvation = -2333.151897 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.25400 -37.82857 -34.37511 -31.71350 -30.33958 -28.99764 -26.12873 -24.98676 -23.11138 -19.61216 -19.28619 -19.13568 -17.25455 -16.29603 -15.39533 -14.77484 -14.64917 -14.16631 -13.82238 -13.20813 -12.88854 -12.71571 -12.31760 -12.12888 -11.25987 -11.15308 -10.81246 -10.70900 -10.55195 -10.44637 -10.29009 -10.16087 -9.89189 -9.65042 -9.38014 -8.89063 -6.95455 -5.77703 -3.06101 2.00059 3.42880 3.48291 3.49647 4.22215 4.47538 4.58938 4.85342 4.92890 5.22773 5.36091 5.46160 5.53865 5.57726 5.70239 5.76011 5.85429 5.98327 6.06662 6.17994 6.20467 6.36180 6.39861 6.55617 6.66064 6.88402 7.07524 7.55390 7.70220 8.41677 9.52504 10.11246 10.45290 11.45036 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.060845 B = 0.007234 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.073005 B = 3869.644049 C = 3983.232168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.135 4.135 13 C -0.092 4.092 14 H 0.084 0.916 15 C -0.174 4.174 16 C 0.372 3.628 17 O -0.460 6.460 18 C -0.178 4.178 19 C -0.086 4.086 20 H 0.095 0.905 21 C -0.129 4.129 22 H 0.255 0.745 23 H 0.384 0.616 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -12.535 2.807 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.176 4.176 13 C -0.110 4.110 14 H 0.102 0.898 15 C -0.212 4.212 16 C 0.248 3.752 17 O -0.334 6.334 18 C -0.216 4.216 19 C -0.105 4.105 20 H 0.113 0.887 21 C -0.168 4.168 22 H 0.065 0.935 23 H 0.218 0.782 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.011 -12.717 2.369 13.281 hybrid contribution 0.106 1.039 0.088 1.048 sum 3.117 -11.678 2.458 12.334 Atomic orbital electron populations 1.69662 1.05106 1.25643 1.57805 1.24738 0.95506 0.97681 1.03057 0.86210 0.78669 0.83921 0.77523 1.21747 1.21779 1.20776 1.19274 0.91016 0.84250 1.42549 0.91224 1.42551 1.05660 0.99756 1.88296 1.20832 0.94138 0.86055 0.92584 0.93423 1.23152 1.01435 0.91828 1.01174 1.22622 0.93201 0.97574 0.97646 0.89757 1.22558 0.99981 0.99590 0.99052 1.25292 0.91978 0.78187 0.79695 1.90389 1.69056 1.39206 1.34714 1.23109 0.95493 0.99752 1.03202 1.22760 0.98921 0.92496 0.96334 0.88680 1.22574 1.01478 0.95836 0.96897 0.93523 0.78176 0.92528 0.90893 0.87842 0.88954 0.88552 0.89088 0.92475 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.70 5.09 -52.38 -0.27 -17.97 16 10 C 0.17 3.33 2.98 -66.86 -0.20 3.13 16 11 H 0.05 0.95 7.85 -51.93 -0.41 0.54 16 12 C -0.14 -2.22 5.80 -25.31 -0.15 -2.37 16 13 C -0.09 -1.15 4.04 -87.73 -0.35 -1.50 16 14 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.17 -2.12 5.82 -27.15 -0.16 -2.28 16 16 C 0.37 4.96 7.24 -27.76 -0.20 4.76 16 17 O -0.46 -7.57 17.99 6.00 0.11 -7.46 16 18 C -0.18 -2.00 6.02 -26.04 -0.16 -2.16 16 19 C -0.09 -1.09 4.10 -87.46 -0.36 -1.45 16 20 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 21 C -0.13 -2.05 5.65 -25.69 -0.15 -2.20 16 22 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.38 9.98 7.51 -40.82 -0.31 9.67 16 24 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 25 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 26 H 0.10 1.36 7.13 -51.93 -0.37 0.99 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 30 H 0.06 0.88 7.23 -51.93 -0.38 0.50 16 31 H 0.07 1.23 7.61 -51.93 -0.39 0.84 16 LS Contribution 254.37 15.07 3.83 3.83 Total: -1.00 -30.59 254.37 -6.94 -37.53 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.35 Total: 5.35 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.97 Total: -11.29 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.46 Total: -45.22 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.11 Total: -7.46 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.59 -6.94 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254922188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.670 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds