Wall clock time and date at job start Sun Mar 29 2020 21:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00189 * 2 1 4 4 H 1.48500 * 109.46988 * 269.99436 * 3 2 1 5 5 H 1.48500 * 109.47354 * 29.99724 * 3 2 1 6 6 H 1.48503 * 109.47066 * 149.99752 * 3 2 1 7 7 C 1.38816 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00045 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99574 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.07540 * 326.46201 * 10 9 7 12 12 C 1.54191 * 110.05211 * 87.92643 * 10 9 7 13 13 C 1.54526 * 104.50948 * 143.62523 * 12 10 9 14 14 H 1.09000 * 112.35052 * 200.30635 * 13 12 10 15 15 C 1.53787 * 110.07500 * 72.64767 * 13 12 10 16 16 C 1.51362 * 107.19400 * 228.81468 * 15 13 12 17 17 O 1.20763 * 126.31696 * 178.93764 * 16 15 13 18 18 C 1.52608 * 107.79317 * 359.75600 * 16 15 13 19 19 C 1.54701 * 104.42314 * 22.36520 * 18 16 15 20 20 H 1.09002 * 113.39718 * 201.45036 * 19 18 16 21 21 C 1.53864 * 110.04883 * 205.00067 * 10 9 7 22 22 H 0.97003 * 119.99384 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00420 * 359.97438 * 9 7 2 24 24 H 1.09005 * 110.42996 * 262.37636 * 12 10 9 25 25 H 1.08997 * 110.43314 * 24.86322 * 12 10 9 26 26 H 1.08998 * 109.89616 * 348.21416 * 15 13 12 27 27 H 1.09004 * 109.89363 * 109.42434 * 15 13 12 28 28 H 1.09004 * 109.92608 * 263.97430 * 18 16 15 29 29 H 1.09001 * 111.20823 * 141.39291 * 18 16 15 30 30 H 1.08997 * 109.92936 * 120.14631 * 21 10 9 31 31 H 1.08997 * 109.92410 * 358.80330 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9845 -3.5545 -0.5633 12 6 2.3665 -4.0879 1.4496 13 6 2.2292 -5.6269 1.4330 14 1 2.0705 -6.0397 2.4293 15 6 3.4195 -6.2551 0.6890 16 6 2.8532 -7.2460 -0.3052 17 8 3.4856 -7.9201 -1.0824 18 6 1.3335 -7.2288 -0.1668 19 6 1.0203 -5.8548 0.4715 20 1 0.0524 -5.8205 0.9717 21 6 1.1876 -4.7689 -0.6094 22 1 -0.4849 0.8401 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 3.3811 -3.7995 1.7244 25 1 1.6454 -3.6490 2.1391 26 1 3.9789 -5.4810 0.1637 27 1 4.0693 -6.7700 1.3967 28 1 1.0114 -8.0354 0.4918 29 1 0.8480 -7.3150 -1.1389 30 1 1.6825 -5.1892 -1.4848 31 1 0.2129 -4.3676 -0.8868 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254922188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:07 Heat of formation + Delta-G solvation = -59.624238 kcal Electronic energy + Delta-G solvation = -13846.900690 eV Core-core repulsion = 11512.906558 eV Total energy + Delta-G solvation = -2333.994132 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.38511 -39.06773 -36.13501 -33.49664 -31.46966 -30.62462 -27.39338 -26.39377 -24.93464 -20.98605 -20.39859 -20.27150 -19.24337 -17.49814 -16.59573 -16.43160 -15.92488 -15.56823 -15.42958 -14.69302 -14.32000 -14.00801 -13.59835 -13.35128 -13.01589 -12.84339 -12.43848 -12.19539 -12.06654 -11.79290 -11.61949 -11.55235 -11.41333 -11.33355 -10.89486 -10.43118 -8.96823 -7.93901 -5.21282 0.97029 1.47060 1.48198 1.56506 2.56712 3.21741 3.37074 3.45437 3.76014 3.80156 4.05896 4.22915 4.34868 4.39271 4.59655 4.69651 4.71242 4.80273 4.81699 4.96517 5.02525 5.10360 5.16093 5.29797 5.44442 5.52258 5.54883 5.62876 6.29902 6.53001 7.35215 8.14132 8.35906 9.29725 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.060845 B = 0.007234 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.073005 B = 3869.644049 C = 3983.232168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.163 3.837 11 H 0.035 0.965 12 C -0.129 4.129 13 C -0.075 4.075 14 H 0.117 0.883 15 C -0.173 4.173 16 C 0.373 3.627 17 O -0.496 6.496 18 C -0.167 4.167 19 C -0.079 4.079 20 H 0.110 0.890 21 C -0.125 4.125 22 H 0.250 0.750 23 H 0.373 0.627 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -13.926 3.730 14.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.798 3.202 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.055 3.945 11 H 0.053 0.947 12 C -0.169 4.169 13 C -0.094 4.094 14 H 0.135 0.865 15 C -0.211 4.211 16 C 0.252 3.748 17 O -0.373 6.373 18 C -0.205 4.205 19 C -0.098 4.098 20 H 0.129 0.871 21 C -0.163 4.163 22 H 0.059 0.941 23 H 0.206 0.794 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.135 0.865 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.560 -14.144 3.304 14.954 hybrid contribution -0.018 1.433 -0.220 1.449 sum 3.543 -12.711 3.083 13.551 Atomic orbital electron populations 1.69811 1.06515 1.25946 1.59821 1.25509 0.96352 1.00914 1.04052 0.85204 0.77789 0.79861 0.77327 1.21676 1.22152 1.19493 1.19638 0.91345 0.85519 1.40637 0.90964 1.42749 1.05341 1.00923 1.88530 1.21127 0.93734 0.85081 0.94591 0.94724 1.22927 1.00720 0.94993 0.98237 1.22580 0.93189 0.94301 0.99330 0.86538 1.22556 1.00081 0.99179 0.99235 1.25608 0.93042 0.77339 0.78835 1.90388 1.69964 1.40766 1.36133 1.23074 0.93752 0.99615 1.04032 1.22733 0.99809 0.92010 0.95209 0.87145 1.22495 0.99896 0.95851 0.98104 0.94078 0.79423 0.92617 0.92687 0.89125 0.86489 0.85252 0.88763 0.92214 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.25 13.06 21.65 0.28 -58.96 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.24 -13.27 9.96 84.03 0.84 -12.44 16 8 H 0.07 3.88 7.83 -2.92 -0.02 3.85 16 9 N -0.74 -36.62 5.09 -319.64 -1.63 -38.24 16 10 C 0.16 6.20 2.98 45.69 0.14 6.34 16 11 H 0.03 1.39 7.85 -2.38 -0.02 1.37 16 12 C -0.13 -4.06 5.80 31.52 0.18 -3.88 16 13 C -0.08 -1.65 4.04 -8.92 -0.04 -1.68 16 14 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 15 C -0.17 -3.72 5.82 30.32 0.18 -3.54 16 16 C 0.37 8.98 7.24 29.93 0.22 9.20 16 17 O -0.50 -15.55 17.99 -1.46 -0.03 -15.57 16 18 C -0.17 -3.17 6.02 31.04 0.19 -2.98 16 19 C -0.08 -1.77 4.10 -8.74 -0.04 -1.80 16 20 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 21 C -0.13 -3.86 5.65 31.27 0.18 -3.68 16 22 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 23 H 0.37 19.89 7.51 -92.71 -0.70 19.20 16 24 H 0.06 1.75 8.12 -2.38 -0.02 1.73 16 25 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 26 H 0.09 2.24 7.13 -2.39 -0.02 2.22 16 27 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.09 1.80 8.05 -2.39 -0.02 1.78 16 30 H 0.06 1.79 7.23 -2.39 -0.02 1.77 16 31 H 0.06 1.97 7.61 -2.39 -0.02 1.95 16 Total: -1.00 -66.48 254.37 3.39 -63.08 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.42 Total: 19.84 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 2.31 Total: -18.37 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -1.34 Total: -97.21 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.03 Total: -15.57 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -66.48 3.39 -63.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254922188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.461 kcal (2) G-P(sol) polarization free energy of solvation -66.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds