Wall clock time and date at job start Sun Mar 29 2020 21:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47401 * 2 1 4 4 H 1.08999 * 109.46835 * 55.22120 * 3 2 1 5 5 C 1.50690 * 109.47257 * 175.22883 * 3 2 1 6 6 H 1.08003 * 120.00381 * 114.53837 * 5 3 2 7 7 C 1.37879 * 119.99967 * 294.53801 * 5 3 2 8 8 N 1.31512 * 119.99968 * 350.62286 * 7 5 3 9 9 Si 1.86806 * 120.00336 * 170.62969 * 7 5 3 10 10 H 1.48503 * 109.46785 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47393 * 119.99902 * 9 7 5 12 12 H 1.48496 * 109.46759 * 239.99855 * 9 7 5 13 13 N 1.46503 * 109.46879 * 295.22800 * 3 2 1 14 14 N 1.40081 * 126.03736 * 299.68472 * 13 3 2 15 15 C 1.30837 * 108.20646 * 179.85879 * 14 13 3 16 16 C 1.39874 * 108.19957 * 0.40235 * 15 14 13 17 17 C 1.34948 * 126.03544 * 119.99787 * 13 3 2 18 18 C 1.50692 * 126.12936 * 359.95765 * 17 13 3 19 19 N 1.46893 * 109.47254 * 275.00027 * 18 17 13 20 20 H 1.09003 * 109.47119 * 183.79451 * 1 2 3 21 21 H 1.08998 * 109.47416 * 303.79783 * 1 2 3 22 22 H 1.09005 * 109.47111 * 63.80113 * 1 2 3 23 23 H 1.09007 * 109.47151 * 239.99756 * 2 1 3 24 24 H 1.08997 * 109.46978 * 120.00280 * 2 1 3 25 25 H 0.97000 * 120.00451 * 180.02562 * 8 7 5 26 26 H 1.08000 * 125.90279 * 180.15187 * 15 14 13 27 27 H 1.07999 * 126.03792 * 179.74242 * 16 15 14 28 28 H 1.09010 * 109.47125 * 34.99821 * 18 17 13 29 29 H 1.09001 * 109.47408 * 154.99466 * 18 17 13 30 30 H 1.00899 * 111.00524 * 56.04317 * 19 18 17 31 31 H 1.00899 * 111.00244 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9804 0.8441 5 6 3.5423 1.4441 0.1182 6 1 4.1479 1.8093 -0.6981 7 6 4.1438 0.9792 1.2684 8 7 3.4143 0.7083 2.3286 9 14 5.9950 0.7344 1.3211 10 1 6.5812 1.1081 0.0089 11 1 6.5775 1.5902 2.3857 12 1 6.2978 -0.6903 1.6104 13 7 1.6478 2.0991 -1.2495 14 7 2.0150 1.6996 -2.5410 15 6 1.4711 2.5280 -3.3953 16 6 0.7487 3.4856 -2.6758 17 6 0.8737 3.1991 -1.3593 18 6 0.2585 3.9699 -0.2199 19 7 -1.0154 3.3461 0.1618 20 1 -0.3633 -1.0254 0.0680 21 1 -0.3634 0.5716 0.8540 22 1 -0.3633 0.4537 -0.9221 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8375 0.3816 3.1380 26 1 1.5669 2.4828 -4.4700 27 1 0.1899 4.3084 -3.0968 28 1 0.9373 3.9613 0.6330 29 1 0.0802 4.9990 -0.5319 30 1 -0.8864 2.3726 0.3935 31 1 -1.4479 3.8448 0.9249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:57 Heat of formation + Delta-G solvation = 61.992193 kcal Electronic energy + Delta-G solvation = -14204.758335 eV Core-core repulsion = 11908.330638 eV Total energy + Delta-G solvation = -2296.427696 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.38057 -35.18632 -34.33340 -32.00058 -30.26346 -29.09301 -26.85706 -24.37692 -23.39979 -21.35684 -19.77256 -18.59673 -16.64876 -16.04873 -15.33016 -14.66717 -14.53199 -13.69155 -13.50146 -13.37870 -12.80835 -12.35915 -12.03900 -11.80556 -11.60560 -11.54241 -11.01910 -10.82865 -10.32671 -10.22747 -9.99305 -9.71028 -9.39753 -8.60111 -8.57700 -8.24992 -7.61021 -6.29666 -4.32822 2.79793 3.18853 3.27500 3.34377 3.61941 3.65699 4.28585 4.98799 5.02790 5.24732 5.58353 5.61523 5.93952 5.98408 6.05065 6.19484 6.31530 6.42442 6.69103 6.71330 6.87578 6.91578 7.21719 7.30228 7.36819 7.58888 7.63999 7.68944 7.93966 8.12835 8.70415 8.79320 9.32559 10.77828 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031473 B = 0.011480 C = 0.010425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.443490 B = 2438.346166 C = 2685.227513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.282 3.718 4 H 0.060 0.940 5 C -0.525 4.525 6 H 0.068 0.932 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.902 3.098 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.280 1.280 13 N -0.315 5.315 14 N -0.283 5.283 15 C 0.008 3.992 16 C -0.279 4.279 17 C 0.072 3.928 18 C 0.127 3.873 19 N -0.846 5.846 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.266 0.734 26 H 0.168 0.832 27 H 0.131 0.869 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.345 0.655 31 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 3.495 -2.571 7.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.183 3.817 4 H 0.078 0.922 5 C -0.563 4.563 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.729 3.271 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.206 1.206 13 N -0.097 5.097 14 N -0.106 5.106 15 C -0.176 4.176 16 C -0.310 4.310 17 C -0.059 4.059 18 C -0.005 4.005 19 N -0.378 5.378 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.185 0.815 27 H 0.149 0.851 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.159 0.841 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.146 2.481 -2.831 6.376 hybrid contribution 0.927 0.424 0.909 1.366 sum -4.218 2.906 -1.922 5.471 Atomic orbital electron populations 1.21864 0.98401 1.00166 1.00219 1.21830 0.92616 0.98690 1.02910 1.19286 0.96341 0.89909 0.76178 0.92201 1.21274 0.89881 1.43365 1.01825 0.91392 1.24896 0.99068 0.94834 0.94760 1.69929 1.35984 1.44484 1.02309 0.86363 0.84428 0.78052 0.78268 1.19481 1.20878 1.20575 1.49478 1.34153 1.19501 1.06587 1.77304 1.21923 1.23329 0.88031 1.23588 0.99359 0.95344 0.99273 1.20967 1.12327 1.06036 0.91712 1.20789 0.97082 0.91915 0.96107 1.20213 0.89587 0.96885 0.93834 1.58846 1.24958 1.07864 1.46163 0.93829 0.93840 0.93700 0.92686 0.89247 0.92422 0.81525 0.85076 0.93714 0.89318 0.84061 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.99 37.16 0.33 -2.56 16 2 C -0.12 -2.82 5.44 -26.73 -0.15 -2.96 16 3 C 0.28 6.90 2.28 -69.09 -0.16 6.74 16 4 H 0.06 1.52 6.73 -51.93 -0.35 1.17 16 5 C -0.53 -14.33 8.68 -34.44 -0.30 -14.63 16 6 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 7 C 0.07 1.80 5.16 -17.82 -0.09 1.71 16 8 N -0.89 -23.94 12.16 55.43 0.67 -23.26 16 9 Si 0.90 21.02 29.55 -169.99 -5.02 16.00 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.32 -7.22 2.78 -51.82 -0.14 -7.37 16 14 N -0.28 -6.53 12.42 30.63 0.38 -6.15 16 15 C 0.01 0.16 12.03 -17.36 -0.21 -0.05 16 16 C -0.28 -5.26 10.72 -40.01 -0.43 -5.69 16 17 C 0.07 1.46 6.44 -82.27 -0.53 0.93 16 18 C 0.13 2.14 6.74 -4.98 -0.03 2.11 16 19 N -0.85 -12.97 9.61 -11.41 -0.11 -13.08 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.79 6.76 -51.93 -0.35 0.44 16 22 H 0.04 0.89 7.85 -51.93 -0.41 0.48 16 23 H 0.05 1.33 8.14 -51.92 -0.42 0.91 16 24 H 0.09 2.22 6.80 -51.93 -0.35 1.86 16 25 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 27 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 28 H 0.04 0.81 7.32 -51.92 -0.38 0.43 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.34 5.69 6.68 -39.29 -0.26 5.43 16 31 H 0.34 4.18 9.08 -39.29 -0.36 3.83 16 LS Contribution 262.23 15.07 3.95 3.95 Total: -1.00 -28.89 262.23 -5.95 -34.85 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -4.12 Total: 9.46 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.56 Total: -14.40 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.80 Total: -49.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.89 -5.95 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.838 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds