Wall clock time and date at job start Sun Mar 29 2020 21:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47401 * 2 1 4 4 H 1.08999 * 109.46835 * 55.22120 * 3 2 1 5 5 C 1.50690 * 109.47257 * 175.22883 * 3 2 1 6 6 H 1.08003 * 120.00381 * 114.53837 * 5 3 2 7 7 C 1.37879 * 119.99967 * 294.53801 * 5 3 2 8 8 N 1.31512 * 119.99968 * 350.62286 * 7 5 3 9 9 Si 1.86806 * 120.00336 * 170.62969 * 7 5 3 10 10 H 1.48503 * 109.46785 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47393 * 119.99902 * 9 7 5 12 12 H 1.48496 * 109.46759 * 239.99855 * 9 7 5 13 13 N 1.46503 * 109.46879 * 295.22800 * 3 2 1 14 14 N 1.40081 * 126.03736 * 299.68472 * 13 3 2 15 15 C 1.30837 * 108.20646 * 179.85879 * 14 13 3 16 16 C 1.39874 * 108.19957 * 0.40235 * 15 14 13 17 17 C 1.34948 * 126.03544 * 119.99787 * 13 3 2 18 18 C 1.50692 * 126.12936 * 359.95765 * 17 13 3 19 19 N 1.46893 * 109.47254 * 275.00027 * 18 17 13 20 20 H 1.09003 * 109.47119 * 183.79451 * 1 2 3 21 21 H 1.08998 * 109.47416 * 303.79783 * 1 2 3 22 22 H 1.09005 * 109.47111 * 63.80113 * 1 2 3 23 23 H 1.09007 * 109.47151 * 239.99756 * 2 1 3 24 24 H 1.08997 * 109.46978 * 120.00280 * 2 1 3 25 25 H 0.97000 * 120.00451 * 180.02562 * 8 7 5 26 26 H 1.08000 * 125.90279 * 180.15187 * 15 14 13 27 27 H 1.07999 * 126.03792 * 179.74242 * 16 15 14 28 28 H 1.09010 * 109.47125 * 34.99821 * 18 17 13 29 29 H 1.09001 * 109.47408 * 154.99466 * 18 17 13 30 30 H 1.00899 * 111.00524 * 56.04317 * 19 18 17 31 31 H 1.00899 * 111.00244 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9804 0.8441 5 6 3.5423 1.4441 0.1182 6 1 4.1479 1.8093 -0.6981 7 6 4.1438 0.9792 1.2684 8 7 3.4143 0.7083 2.3286 9 14 5.9950 0.7344 1.3211 10 1 6.5812 1.1081 0.0089 11 1 6.5775 1.5902 2.3857 12 1 6.2978 -0.6903 1.6104 13 7 1.6478 2.0991 -1.2495 14 7 2.0150 1.6996 -2.5410 15 6 1.4711 2.5280 -3.3953 16 6 0.7487 3.4856 -2.6758 17 6 0.8737 3.1991 -1.3593 18 6 0.2585 3.9699 -0.2199 19 7 -1.0154 3.3461 0.1618 20 1 -0.3633 -1.0254 0.0680 21 1 -0.3634 0.5716 0.8540 22 1 -0.3633 0.4537 -0.9221 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8375 0.3816 3.1380 26 1 1.5669 2.4828 -4.4700 27 1 0.1899 4.3084 -3.0968 28 1 0.9373 3.9613 0.6330 29 1 0.0802 4.9990 -0.5319 30 1 -0.8864 2.3726 0.3935 31 1 -1.4479 3.8448 0.9249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255151470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:57 Heat of formation + Delta-G solvation = 42.224616 kcal Electronic energy + Delta-G solvation = -14205.615521 eV Core-core repulsion = 11908.330638 eV Total energy + Delta-G solvation = -2297.284883 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.96223 -36.99341 -35.70396 -33.95937 -31.88605 -30.60640 -28.73178 -25.77695 -25.26918 -23.03693 -21.37355 -20.25271 -18.59576 -17.71843 -16.75266 -16.38584 -16.10936 -15.28952 -15.13021 -14.95208 -14.48738 -13.91923 -13.61716 -13.47375 -13.32413 -13.03264 -12.86490 -12.67802 -12.21765 -12.01808 -11.78666 -11.47477 -11.16826 -10.61948 -10.06878 -9.69756 -9.20426 -8.32784 -6.43281 1.22494 1.32588 1.36771 1.48170 2.00839 2.13385 2.34472 2.96641 3.70607 3.85330 4.06304 4.22271 4.36904 4.38084 4.50420 4.64428 4.74566 4.95817 4.98807 5.08932 5.14388 5.37366 5.42400 5.56704 5.60849 5.91635 6.01025 6.11112 6.37567 6.50618 6.70595 7.16142 7.25400 8.73341 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031473 B = 0.011480 C = 0.010425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.443490 B = 2438.346166 C = 2685.227513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.291 3.709 4 H 0.047 0.953 5 C -0.548 4.548 6 H 0.042 0.958 7 C 0.032 3.968 8 N -0.905 5.905 9 Si 0.957 3.043 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.272 1.272 13 N -0.336 5.336 14 N -0.333 5.333 15 C 0.015 3.985 16 C -0.277 4.277 17 C 0.059 3.941 18 C 0.130 3.870 19 N -0.842 5.842 20 H 0.064 0.936 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.271 0.729 26 H 0.205 0.795 27 H 0.165 0.835 28 H 0.026 0.974 29 H 0.118 0.882 30 H 0.338 0.662 31 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.515 4.219 -2.930 8.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.153 4.153 3 C 0.191 3.809 4 H 0.065 0.935 5 C -0.587 4.587 6 H 0.060 0.940 7 C -0.170 4.170 8 N -0.543 5.543 9 Si 0.782 3.218 10 H -0.205 1.205 11 H -0.197 1.197 12 H -0.197 1.197 13 N -0.118 5.118 14 N -0.156 5.156 15 C -0.169 4.169 16 C -0.307 4.307 17 C -0.071 4.071 18 C -0.002 4.002 19 N -0.374 5.374 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.221 0.779 27 H 0.182 0.818 28 H 0.044 0.956 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.963 3.222 -3.180 7.487 hybrid contribution 1.140 0.261 0.955 1.510 sum -4.823 3.483 -2.224 6.351 Atomic orbital electron populations 1.21707 0.95373 1.01682 1.00398 1.21654 0.95240 0.97581 1.00794 1.18928 0.94628 0.90409 0.76905 0.93508 1.21386 0.91590 1.44284 1.01401 0.94010 1.25515 1.02707 0.94367 0.94373 1.69977 1.37319 1.44398 1.02556 0.85528 0.80024 0.78401 0.77861 1.20451 1.19745 1.19675 1.49266 1.35740 1.20765 1.06027 1.77249 1.24134 1.25591 0.88670 1.24288 0.97665 0.94239 1.00708 1.21389 1.11848 1.06447 0.91020 1.21480 0.96532 0.91200 0.97926 1.20279 0.89649 0.97948 0.92299 1.58834 1.23935 1.07566 1.47111 0.91747 0.92722 0.94188 0.94607 0.91314 0.91958 0.77871 0.81767 0.95567 0.86414 0.84888 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.99 71.98 0.65 -4.46 16 2 C -0.11 -5.36 5.44 30.59 0.17 -5.20 16 3 C 0.29 14.57 2.28 44.24 0.10 14.67 16 4 H 0.05 2.44 6.73 -2.39 -0.02 2.43 16 5 C -0.55 -30.76 8.68 25.60 0.22 -30.53 16 6 H 0.04 2.50 7.83 -2.91 -0.02 2.48 16 7 C 0.03 1.73 5.16 84.66 0.44 2.16 16 8 N -0.90 -49.01 12.16 21.45 0.26 -48.75 16 9 Si 0.96 43.44 29.55 68.60 2.03 45.46 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.34 -15.47 2.78 -317.86 -0.88 -16.36 16 14 N -0.33 -15.42 12.42 -57.02 -0.71 -16.13 16 15 C 0.01 0.54 12.03 85.24 1.03 1.57 16 16 C -0.28 -9.72 10.72 21.99 0.24 -9.48 16 17 C 0.06 2.31 6.44 41.40 0.27 2.57 16 18 C 0.13 4.19 6.74 85.56 0.58 4.77 16 19 N -0.84 -24.17 9.61 -190.02 -1.83 -26.00 16 20 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 21 H 0.05 1.94 6.76 -2.39 -0.02 1.92 16 22 H 0.04 1.55 7.85 -2.38 -0.02 1.53 16 23 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.07 3.48 6.80 -2.39 -0.02 3.46 16 25 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 26 H 0.20 5.71 8.06 -2.91 -0.02 5.68 16 27 H 0.16 4.58 8.06 -2.91 -0.02 4.55 16 28 H 0.03 0.94 7.32 -2.38 -0.02 0.92 16 29 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.34 10.70 6.68 -89.69 -0.60 10.10 16 31 H 0.36 8.01 9.08 -89.69 -0.81 7.20 16 Total: -1.00 -62.34 262.23 2.27 -60.06 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.28 Total: 25.64 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.68 Total: -23.93 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.16 Total: -107.23 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -62.34 2.27 -60.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.289 kcal (2) G-P(sol) polarization free energy of solvation -62.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds