Wall clock time and date at job start Sun Mar 29 2020 21:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.08995 * 109.46714 * 305.46429 * 3 2 1 5 5 C 1.50696 * 109.47308 * 185.46083 * 3 2 1 6 6 H 1.08005 * 119.99896 * 269.86978 * 5 3 2 7 7 C 1.37878 * 120.00143 * 89.86981 * 5 3 2 8 8 N 1.31510 * 119.99694 * 352.84344 * 7 5 3 9 9 Si 1.86799 * 119.99935 * 172.83800 * 7 5 3 10 10 H 1.48502 * 109.46919 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47209 * 300.00187 * 9 7 5 12 12 H 1.48504 * 109.46802 * 60.00673 * 9 7 5 13 13 N 1.46500 * 109.46835 * 65.45656 * 3 2 1 14 14 C 1.36887 * 126.39433 * 60.02831 * 13 3 2 15 15 C 1.34670 * 106.81830 * 179.97438 * 14 13 3 16 16 N 1.34130 * 108.01821 * 0.02562 * 15 14 13 17 17 C 1.30502 * 109.25560 * 359.72357 * 16 15 14 18 18 C 1.50703 * 125.65090 * 180.28873 * 17 16 15 19 19 N 1.46900 * 109.47233 * 270.17888 * 18 17 16 20 20 H 1.09006 * 109.47209 * 299.99774 * 1 2 3 21 21 H 1.08999 * 109.47331 * 59.99976 * 1 2 3 22 22 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47209 * 240.00226 * 2 1 3 24 24 H 1.08999 * 109.47331 * 120.00024 * 2 1 3 25 25 H 0.97001 * 120.00742 * 354.60480 * 8 7 5 26 26 H 1.07997 * 126.59014 * 359.96759 * 14 13 3 27 27 H 1.07992 * 125.99320 * 180.02562 * 15 14 13 28 28 H 1.09001 * 109.47012 * 30.17371 * 18 17 16 29 29 H 1.08996 * 109.47253 * 150.17535 * 18 17 16 30 30 H 1.00900 * 110.99930 * 56.04343 * 19 18 17 31 31 H 1.00903 * 110.99752 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5990 1.9838 -0.8370 5 6 3.5409 1.4447 -0.1352 6 1 4.1626 1.4179 0.7475 7 6 4.1204 1.4809 -1.3858 8 7 3.3711 1.3715 -2.4610 9 14 5.9696 1.6853 -1.5527 10 1 6.3388 1.6940 -2.9910 11 1 6.3843 2.9671 -0.9279 12 1 6.6557 0.5578 -0.8719 13 7 1.6618 2.0941 1.2564 14 6 2.0259 1.7020 2.5164 15 6 1.4639 2.5752 3.3739 16 7 0.7750 3.4756 2.6571 17 6 0.8936 3.1969 1.3877 18 6 0.2733 3.9750 0.2559 19 7 -1.0593 3.4318 -0.0392 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.4227 1.1873 -2.3747 26 1 2.6449 0.8551 2.7734 27 1 1.5524 2.5543 4.4500 28 1 0.1833 5.0229 0.5419 29 1 0.9034 3.8929 -0.6297 30 1 -1.6425 3.4373 0.7842 31 1 -1.4966 3.9374 -0.7950 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151922.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:07 Heat of formation + Delta-G solvation = 41.534317 kcal Electronic energy + Delta-G solvation = -14248.560809 eV Core-core repulsion = 11951.245993 eV Total energy + Delta-G solvation = -2297.314816 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.24835 -35.60062 -34.30817 -32.23885 -30.75306 -28.76589 -26.63141 -24.45073 -23.37974 -21.48222 -19.90873 -18.86690 -17.38624 -16.21869 -15.36888 -14.69453 -13.98260 -13.89816 -13.65069 -13.37238 -12.94961 -12.68520 -12.44285 -12.26268 -11.62279 -11.28719 -10.96693 -10.80022 -10.46888 -10.23138 -10.11536 -9.35796 -9.15228 -8.70749 -8.50672 -8.29242 -7.57953 -6.66495 -4.43774 2.97244 3.30926 3.33223 3.51622 3.81187 3.92027 4.32922 4.92686 5.07263 5.20338 5.55183 5.74276 5.89700 5.93860 5.97336 6.12080 6.14879 6.40059 6.51409 6.65862 6.71853 6.92602 7.04188 7.24636 7.37338 7.56245 7.64181 7.79843 7.99837 8.31823 8.51969 8.89852 9.27554 10.70001 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.011655 C = 0.010891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.496488 B = 2401.758677 C = 2570.212073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.240 3.760 4 H 0.066 0.934 5 C -0.613 4.613 6 H 0.059 0.941 7 C 0.032 3.968 8 N -0.895 5.895 9 Si 1.069 2.931 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.398 5.398 14 C -0.037 4.037 15 C -0.060 4.060 16 N -0.510 5.510 17 C 0.188 3.812 18 C 0.153 3.847 19 N -0.841 5.841 20 H 0.047 0.953 21 H 0.054 0.946 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.272 0.728 26 H 0.159 0.841 27 H 0.156 0.844 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.343 0.657 31 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 0.959 3.687 5.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.140 3.860 4 H 0.084 0.916 5 C -0.651 4.651 6 H 0.077 0.923 7 C -0.175 4.175 8 N -0.529 5.529 9 Si 0.896 3.104 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.075 5.075 14 C -0.176 4.176 15 C -0.210 4.210 16 N -0.231 5.231 17 C -0.075 4.075 18 C 0.021 3.979 19 N -0.372 5.372 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.177 0.823 27 H 0.174 0.826 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.155 0.845 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.281 1.045 2.498 4.254 hybrid contribution -0.964 -0.078 1.235 1.569 sum -4.245 0.967 3.733 5.735 Atomic orbital electron populations 1.21781 0.97038 0.99676 1.01812 1.21976 0.93952 0.98462 1.01664 1.19523 0.96519 0.89977 0.79999 0.91579 1.22083 0.89696 1.57438 0.95883 0.92296 1.25899 1.07247 0.92820 0.91523 1.70823 1.08363 1.43047 1.30669 0.83539 0.73627 0.76895 0.76371 1.20444 1.21176 1.21100 1.46035 1.33298 1.20032 1.08117 1.22477 1.06706 1.03853 0.84565 1.21977 1.03926 0.96190 0.98884 1.70018 1.23873 1.27659 1.01509 1.22641 0.99928 0.91517 0.93425 1.19856 0.90217 0.94004 0.93850 1.58641 1.04314 1.61729 1.12485 0.93402 0.92716 0.94427 0.91175 0.93191 0.91648 0.82324 0.82633 0.93296 0.89491 0.84503 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.80 37.15 0.36 -2.42 16 2 C -0.12 -2.64 5.28 -26.73 -0.14 -2.78 16 3 C 0.24 5.68 1.93 -69.08 -0.13 5.55 16 4 H 0.07 1.67 5.46 -51.93 -0.28 1.39 16 5 C -0.61 -16.13 8.37 -34.44 -0.29 -16.42 16 6 H 0.06 1.59 7.61 -52.48 -0.40 1.19 16 7 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 8 N -0.89 -24.86 13.55 55.43 0.75 -24.11 16 9 Si 1.07 23.85 29.91 -169.99 -5.08 18.77 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.40 -8.86 2.07 -108.06 -0.22 -9.08 16 14 C -0.04 -0.78 10.47 -16.56 -0.17 -0.95 16 15 C -0.06 -1.20 11.87 -17.81 -0.21 -1.41 16 16 N -0.51 -10.89 11.25 -10.82 -0.12 -11.01 16 17 C 0.19 3.99 7.42 -155.42 -1.15 2.84 16 18 C 0.15 2.74 6.92 -4.97 -0.03 2.71 16 19 N -0.84 -12.77 9.61 -11.41 -0.11 -12.88 16 20 H 0.05 0.95 7.77 -51.93 -0.40 0.55 16 21 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.60 7.88 -51.93 -0.41 1.19 16 24 H 0.05 1.06 7.79 -51.93 -0.40 0.66 16 25 H 0.27 7.47 6.55 -40.82 -0.27 7.20 16 26 H 0.16 3.03 8.06 -52.49 -0.42 2.61 16 27 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.68 7.08 -51.93 -0.37 1.32 16 30 H 0.34 5.00 8.99 -39.29 -0.35 4.65 16 31 H 0.34 4.17 9.08 -39.29 -0.36 3.82 16 LS Contribution 263.97 15.07 3.98 3.98 Total: -1.00 -29.04 263.97 -6.83 -35.87 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -4.15 Total: 10.61 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.87 Total: -12.14 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.30 Total: -57.08 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.08 Total: 18.77 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.04 -6.83 -35.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151922.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.406 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds