Wall clock time and date at job start Sun Mar 29 2020 21:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.08995 * 109.46714 * 305.46429 * 3 2 1 5 5 C 1.50696 * 109.47308 * 185.46083 * 3 2 1 6 6 H 1.08005 * 119.99896 * 269.86978 * 5 3 2 7 7 C 1.37878 * 120.00143 * 89.86981 * 5 3 2 8 8 N 1.31510 * 119.99694 * 352.84344 * 7 5 3 9 9 Si 1.86799 * 119.99935 * 172.83800 * 7 5 3 10 10 H 1.48502 * 109.46919 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47209 * 300.00187 * 9 7 5 12 12 H 1.48504 * 109.46802 * 60.00673 * 9 7 5 13 13 N 1.46500 * 109.46835 * 65.45656 * 3 2 1 14 14 C 1.36887 * 126.39433 * 60.02831 * 13 3 2 15 15 C 1.34670 * 106.81830 * 179.97438 * 14 13 3 16 16 N 1.34130 * 108.01821 * 0.02562 * 15 14 13 17 17 C 1.30502 * 109.25560 * 359.72357 * 16 15 14 18 18 C 1.50703 * 125.65090 * 180.28873 * 17 16 15 19 19 N 1.46900 * 109.47233 * 270.17888 * 18 17 16 20 20 H 1.09006 * 109.47209 * 299.99774 * 1 2 3 21 21 H 1.08999 * 109.47331 * 59.99976 * 1 2 3 22 22 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47209 * 240.00226 * 2 1 3 24 24 H 1.08999 * 109.47331 * 120.00024 * 2 1 3 25 25 H 0.97001 * 120.00742 * 354.60480 * 8 7 5 26 26 H 1.07997 * 126.59014 * 359.96759 * 14 13 3 27 27 H 1.07992 * 125.99320 * 180.02562 * 15 14 13 28 28 H 1.09001 * 109.47012 * 30.17371 * 18 17 16 29 29 H 1.08996 * 109.47253 * 150.17535 * 18 17 16 30 30 H 1.00900 * 110.99930 * 56.04343 * 19 18 17 31 31 H 1.00903 * 110.99752 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5990 1.9838 -0.8370 5 6 3.5409 1.4447 -0.1352 6 1 4.1626 1.4179 0.7475 7 6 4.1204 1.4809 -1.3858 8 7 3.3711 1.3715 -2.4610 9 14 5.9696 1.6853 -1.5527 10 1 6.3388 1.6940 -2.9910 11 1 6.3843 2.9671 -0.9279 12 1 6.6557 0.5578 -0.8719 13 7 1.6618 2.0941 1.2564 14 6 2.0259 1.7020 2.5164 15 6 1.4639 2.5752 3.3739 16 7 0.7750 3.4756 2.6571 17 6 0.8936 3.1969 1.3877 18 6 0.2733 3.9750 0.2559 19 7 -1.0593 3.4318 -0.0392 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.4227 1.1873 -2.3747 26 1 2.6449 0.8551 2.7734 27 1 1.5524 2.5543 4.4500 28 1 0.1833 5.0229 0.5419 29 1 0.9034 3.8929 -0.6297 30 1 -1.6425 3.4373 0.7842 31 1 -1.4966 3.9374 -0.7950 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255151922.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:06 Heat of formation + Delta-G solvation = 22.806003 kcal Electronic energy + Delta-G solvation = -14249.372930 eV Core-core repulsion = 11951.245993 eV Total energy + Delta-G solvation = -2298.126937 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.89163 -37.42709 -35.66515 -34.17542 -32.41764 -30.29564 -28.49903 -25.93435 -25.26881 -23.15686 -21.59016 -20.55877 -19.22729 -17.90920 -16.84626 -16.24101 -15.71334 -15.54144 -15.36523 -14.91073 -14.53686 -14.33613 -14.22819 -13.84331 -13.17663 -13.01593 -12.70647 -12.57225 -12.18717 -11.97575 -11.85514 -11.16566 -10.88192 -10.68573 -10.10331 -9.75911 -9.18528 -8.75759 -6.53535 1.33089 1.52046 1.56034 1.77132 2.20921 2.25187 2.48904 3.07173 3.50244 3.82315 3.98814 4.08177 4.25617 4.37267 4.41878 4.48780 4.64740 4.69833 4.89495 5.02105 5.04139 5.20742 5.36064 5.57332 5.83590 5.96244 6.01088 6.09094 6.37995 6.51899 6.62248 7.23430 7.27465 8.61408 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.011655 C = 0.010891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.496488 B = 2401.758677 C = 2570.212073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 C 0.248 3.752 4 H 0.047 0.953 5 C -0.625 4.625 6 H 0.048 0.952 7 C -0.009 4.009 8 N -0.917 5.917 9 Si 1.110 2.890 10 H -0.280 1.280 11 H -0.278 1.278 12 H -0.269 1.269 13 N -0.410 5.410 14 C -0.057 4.057 15 C -0.056 4.056 16 N -0.521 5.521 17 C 0.177 3.823 18 C 0.157 3.843 19 N -0.840 5.840 20 H 0.040 0.960 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.264 0.736 26 H 0.171 0.829 27 H 0.189 0.811 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.349 0.651 31 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 0.963 4.466 6.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.153 4.153 3 C 0.147 3.853 4 H 0.064 0.936 5 C -0.663 4.663 6 H 0.067 0.933 7 C -0.211 4.211 8 N -0.552 5.552 9 Si 0.932 3.068 10 H -0.205 1.205 11 H -0.204 1.204 12 H -0.194 1.194 13 N -0.088 5.088 14 C -0.194 4.194 15 C -0.205 4.205 16 N -0.243 5.243 17 C -0.086 4.086 18 C 0.025 3.975 19 N -0.373 5.373 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.188 0.812 27 H 0.206 0.794 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.466 1.049 3.299 4.898 hybrid contribution -0.964 -0.056 1.057 1.432 sum -4.430 0.993 4.355 6.291 Atomic orbital electron populations 1.21613 0.94849 1.01067 1.01190 1.21826 0.95782 0.96883 1.00830 1.19263 0.95063 0.90796 0.80175 0.93561 1.22317 0.91226 1.57208 0.95507 0.93350 1.27082 1.10470 0.92162 0.91393 1.70913 1.08176 1.44835 1.31242 0.83004 0.69734 0.77634 0.76452 1.20472 1.20418 1.19401 1.45949 1.34165 1.20662 1.08014 1.22837 1.07477 1.04829 0.84270 1.22533 1.02571 0.95097 1.00331 1.70069 1.24471 1.28112 1.01611 1.23264 0.99725 0.91270 0.94323 1.19793 0.91046 0.94564 0.92089 1.58536 1.03413 1.61997 1.13385 0.94069 0.93105 0.92011 0.92832 0.93024 0.92513 0.81200 0.79386 0.91699 0.91462 0.83832 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 9.80 71.98 0.71 -4.10 16 2 C -0.11 -4.92 5.28 30.59 0.16 -4.76 16 3 C 0.25 11.79 1.93 44.25 0.09 11.88 16 4 H 0.05 2.39 5.46 -2.39 -0.01 2.38 16 5 C -0.62 -33.00 8.37 25.60 0.21 -32.78 16 6 H 0.05 2.61 7.61 -2.91 -0.02 2.58 16 7 C -0.01 -0.49 5.45 84.66 0.46 -0.03 16 8 N -0.92 -51.40 13.55 21.45 0.29 -51.11 16 9 Si 1.11 47.65 29.91 68.60 2.05 49.70 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 13 N -0.41 -18.04 2.07 -495.79 -1.03 -19.07 16 14 C -0.06 -2.31 10.47 83.09 0.87 -1.44 16 15 C -0.06 -2.13 11.87 83.52 0.99 -1.14 16 16 N -0.52 -21.44 11.25 -188.14 -2.12 -23.56 16 17 C 0.18 7.36 7.42 138.13 1.02 8.39 16 18 C 0.16 5.54 6.92 85.56 0.59 6.13 16 19 N -0.84 -24.45 9.61 -190.01 -1.83 -26.28 16 20 H 0.04 1.57 7.77 -2.38 -0.02 1.55 16 21 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 2.46 7.88 -2.38 -0.02 2.44 16 24 H 0.05 2.17 7.79 -2.39 -0.02 2.15 16 25 H 0.26 14.81 6.55 -92.71 -0.61 14.20 16 26 H 0.17 6.31 8.06 -2.91 -0.02 6.28 16 27 H 0.19 5.68 8.06 -2.91 -0.02 5.65 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 2.63 7.08 -2.39 -0.02 2.61 16 30 H 0.35 9.59 8.99 -89.69 -0.81 8.78 16 31 H 0.36 8.24 9.08 -89.69 -0.81 7.42 16 Total: -1.00 -60.53 263.97 2.16 -58.37 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.32 Total: 29.79 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 5.11 Total: -17.86 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -4.68 Total: -120.01 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.05 Total: 49.70 kcal Total: -60.53 2.16 -58.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151922.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.177 kcal (2) G-P(sol) polarization free energy of solvation -60.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds