Wall clock time and date at job start Sun Mar 29 2020 21:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47023 * 2 1 4 4 H 1.08997 * 109.46857 * 54.60934 * 3 2 1 5 5 C 1.50695 * 109.46873 * 174.60892 * 3 2 1 6 6 H 1.08003 * 119.99946 * 114.57074 * 5 3 2 7 7 C 1.37879 * 120.00264 * 294.57083 * 5 3 2 8 8 N 1.31512 * 119.99987 * 350.69655 * 7 5 3 9 9 Si 1.86804 * 120.00031 * 170.70451 * 7 5 3 10 10 H 1.48500 * 109.47012 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47353 * 119.99958 * 9 7 5 12 12 H 1.48504 * 109.46898 * 239.99630 * 9 7 5 13 13 N 1.46494 * 109.47073 * 294.61086 * 3 2 1 14 14 C 1.34949 * 126.03757 * 274.99613 * 13 3 2 15 15 C 1.35315 * 107.74782 * 179.97438 * 14 13 3 16 16 C 1.39872 * 107.92022 * 0.02562 * 15 14 13 17 17 C 1.50700 * 125.89909 * 180.02562 * 16 15 14 18 18 N 1.46897 * 109.47347 * 95.00207 * 17 16 15 19 19 N 1.30843 * 108.20069 * 359.74048 * 16 15 14 20 20 H 1.08995 * 109.47213 * 295.68164 * 1 2 3 21 21 H 1.09000 * 109.47297 * 175.68260 * 1 2 3 22 22 H 1.09000 * 109.47366 * 55.68486 * 1 2 3 23 23 H 1.08997 * 109.47364 * 120.00541 * 2 1 3 24 24 H 1.09010 * 109.46923 * 240.00130 * 2 1 3 25 25 H 0.96997 * 120.00296 * 179.97438 * 8 7 5 26 26 H 1.07998 * 126.12632 * 359.96098 * 14 13 3 27 27 H 1.08003 * 126.04518 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.46906 * 214.99446 * 17 16 15 29 29 H 1.08997 * 109.47311 * 334.99554 * 17 16 15 30 30 H 1.00905 * 111.00505 * 56.03953 * 18 17 16 31 31 H 1.00895 * 111.00190 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9834 0.8378 5 6 3.5410 1.4446 0.1335 6 1 4.1548 1.8074 -0.6777 7 6 4.1309 0.9833 1.2912 8 7 3.3905 0.7141 2.3443 9 14 5.9817 0.7408 1.3640 10 1 6.5813 1.1119 0.0571 11 1 6.5519 1.5999 2.4326 12 1 6.2831 -0.6829 1.6600 13 7 1.6605 2.0946 -1.2557 14 6 2.3443 2.0385 -2.4177 15 6 1.6650 2.7693 -3.3318 16 6 0.5273 3.2904 -2.7068 17 6 -0.5147 4.1650 -3.3552 18 7 -1.6288 3.3318 -3.8269 19 7 0.5209 2.8823 -1.4637 20 1 -0.3633 0.4453 0.9261 21 1 -0.3634 -1.0247 -0.0774 22 1 -0.3634 0.5793 -0.8488 23 1 1.8934 -0.5139 0.8899 24 1 1.8934 -0.5139 -0.8901 25 1 3.8054 0.3893 3.1586 26 1 3.2683 1.5060 -2.5877 27 1 1.9507 2.9232 -4.3619 28 1 -0.8846 4.8887 -2.6289 29 1 -0.0720 4.6921 -4.2002 30 1 -2.0149 2.7835 -3.0729 31 1 -2.3410 3.8953 -4.2663 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152983.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:00 Heat of formation + Delta-G solvation = 61.385436 kcal Electronic energy + Delta-G solvation = -13790.849130 eV Core-core repulsion = 11494.395123 eV Total energy + Delta-G solvation = -2296.454007 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30060 -35.49129 -34.08835 -31.97125 -30.10787 -29.04645 -27.12162 -24.73843 -23.09410 -21.06864 -19.64769 -18.84133 -16.62977 -16.01396 -15.48178 -14.68697 -14.44013 -13.98937 -13.60129 -12.98092 -12.92542 -12.32591 -11.90150 -11.81866 -11.56322 -11.43895 -11.06478 -10.85952 -10.32673 -10.32153 -9.93074 -9.83523 -9.31899 -8.66269 -8.60143 -8.28603 -7.59305 -6.34069 -4.40713 2.88668 3.15630 3.24087 3.27348 3.50658 3.66583 4.24227 4.97096 4.99961 5.32962 5.40947 5.79949 5.93260 6.06353 6.15093 6.30836 6.34522 6.58008 6.76747 6.80912 6.90445 6.98977 7.19501 7.26050 7.44668 7.50861 7.57828 7.65292 7.86762 8.13332 8.66202 8.76386 9.25732 10.74183 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.045183 B = 0.008783 C = 0.007846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.548129 B = 3187.297734 C = 3567.892186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.281 3.719 4 H 0.065 0.935 5 C -0.543 4.543 6 H 0.069 0.931 7 C 0.072 3.928 8 N -0.880 5.880 9 Si 0.904 3.096 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.320 5.320 14 C 0.071 3.929 15 C -0.290 4.290 16 C 0.043 3.957 17 C 0.152 3.848 18 N -0.845 5.845 19 N -0.306 5.306 20 H 0.047 0.953 21 H 0.036 0.964 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.042 0.958 25 H 0.268 0.732 26 H 0.164 0.836 27 H 0.131 0.869 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.344 0.656 31 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 2.103 -7.294 8.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C 0.182 3.818 4 H 0.083 0.917 5 C -0.582 4.582 6 H 0.087 0.913 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.731 3.269 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.100 5.100 14 C -0.080 4.080 15 C -0.320 4.320 16 C -0.121 4.121 17 C 0.020 3.980 18 N -0.375 5.375 19 N -0.132 5.132 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.182 0.818 27 H 0.149 0.851 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.321 1.656 -6.291 7.810 hybrid contribution 0.952 0.278 0.084 0.995 sum -3.370 1.934 -6.207 7.323 Atomic orbital electron populations 1.21808 0.97939 0.99549 1.01262 1.21877 0.93321 0.98499 1.02224 1.19275 0.95542 0.89032 0.77925 0.91704 1.21259 0.89500 1.44944 1.02449 0.91270 1.24888 0.99104 0.94599 0.94643 1.69965 1.35999 1.43385 1.02300 0.86336 0.84071 0.78087 0.78425 1.19425 1.20727 1.20520 1.49481 1.14841 1.35106 1.10572 1.22383 0.98697 1.00287 0.86586 1.21084 0.99712 1.10583 1.00633 1.21817 0.97100 1.01016 0.92172 1.19880 0.89352 0.91826 0.96958 1.58666 1.13282 1.29264 1.36308 1.77111 1.06526 1.12363 1.17152 0.93382 0.94501 0.93341 0.89105 0.93891 0.92244 0.81842 0.85091 0.94746 0.89927 0.84310 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.85 37.16 0.37 -2.70 16 2 C -0.12 -2.78 5.50 -26.73 -0.15 -2.92 16 3 C 0.28 7.03 2.56 -69.09 -0.18 6.85 16 4 H 0.07 1.82 8.09 -51.93 -0.42 1.40 16 5 C -0.54 -14.18 8.28 -34.44 -0.29 -14.47 16 6 H 0.07 1.78 6.61 -52.48 -0.35 1.44 16 7 C 0.07 1.89 5.16 -17.82 -0.09 1.79 16 8 N -0.88 -23.81 12.15 55.43 0.67 -23.14 16 9 Si 0.90 20.14 29.55 -169.99 -5.02 15.12 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.32 -7.43 3.05 -56.00 -0.17 -7.60 16 14 C 0.07 1.48 10.33 -17.22 -0.18 1.31 16 15 C -0.29 -5.56 10.74 -40.01 -0.43 -5.99 16 16 C 0.04 0.84 6.73 -82.40 -0.55 0.28 16 17 C 0.15 2.25 7.35 -4.98 -0.04 2.22 16 18 N -0.84 -11.24 9.61 -11.41 -0.11 -11.35 16 19 N -0.31 -6.83 11.82 33.67 0.40 -6.43 16 20 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 1.02 6.98 -51.93 -0.36 0.66 16 23 H 0.09 2.25 6.79 -51.93 -0.35 1.90 16 24 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.16 3.15 7.47 -52.49 -0.39 2.76 16 27 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.34 4.78 8.99 -39.29 -0.35 4.43 16 31 H 0.34 3.39 9.08 -39.29 -0.36 3.03 16 LS Contribution 265.06 15.07 3.99 3.99 Total: -1.00 -28.24 265.06 -6.02 -34.27 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.25 Total: 8.77 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.53 Total: -13.63 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.79 Total: -48.52 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.24 -6.02 -34.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152983.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.653 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds