Wall clock time and date at job start Sun Mar 29 2020 21:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47023 * 2 1 4 4 H 1.08997 * 109.46857 * 54.60934 * 3 2 1 5 5 C 1.50695 * 109.46873 * 174.60892 * 3 2 1 6 6 H 1.08003 * 119.99946 * 114.57074 * 5 3 2 7 7 C 1.37879 * 120.00264 * 294.57083 * 5 3 2 8 8 N 1.31512 * 119.99987 * 350.69655 * 7 5 3 9 9 Si 1.86804 * 120.00031 * 170.70451 * 7 5 3 10 10 H 1.48500 * 109.47012 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47353 * 119.99958 * 9 7 5 12 12 H 1.48504 * 109.46898 * 239.99630 * 9 7 5 13 13 N 1.46494 * 109.47073 * 294.61086 * 3 2 1 14 14 C 1.34949 * 126.03757 * 274.99613 * 13 3 2 15 15 C 1.35315 * 107.74782 * 179.97438 * 14 13 3 16 16 C 1.39872 * 107.92022 * 0.02562 * 15 14 13 17 17 C 1.50700 * 125.89909 * 180.02562 * 16 15 14 18 18 N 1.46897 * 109.47347 * 95.00207 * 17 16 15 19 19 N 1.30843 * 108.20069 * 359.74048 * 16 15 14 20 20 H 1.08995 * 109.47213 * 295.68164 * 1 2 3 21 21 H 1.09000 * 109.47297 * 175.68260 * 1 2 3 22 22 H 1.09000 * 109.47366 * 55.68486 * 1 2 3 23 23 H 1.08997 * 109.47364 * 120.00541 * 2 1 3 24 24 H 1.09010 * 109.46923 * 240.00130 * 2 1 3 25 25 H 0.96997 * 120.00296 * 179.97438 * 8 7 5 26 26 H 1.07998 * 126.12632 * 359.96098 * 14 13 3 27 27 H 1.08003 * 126.04518 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.46906 * 214.99446 * 17 16 15 29 29 H 1.08997 * 109.47311 * 334.99554 * 17 16 15 30 30 H 1.00905 * 111.00505 * 56.03953 * 18 17 16 31 31 H 1.00895 * 111.00190 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9834 0.8378 5 6 3.5410 1.4446 0.1335 6 1 4.1548 1.8074 -0.6777 7 6 4.1309 0.9833 1.2912 8 7 3.3905 0.7141 2.3443 9 14 5.9817 0.7408 1.3640 10 1 6.5813 1.1119 0.0571 11 1 6.5519 1.5999 2.4326 12 1 6.2831 -0.6829 1.6600 13 7 1.6605 2.0946 -1.2557 14 6 2.3443 2.0385 -2.4177 15 6 1.6650 2.7693 -3.3318 16 6 0.5273 3.2904 -2.7068 17 6 -0.5147 4.1650 -3.3552 18 7 -1.6288 3.3318 -3.8269 19 7 0.5209 2.8823 -1.4637 20 1 -0.3633 0.4453 0.9261 21 1 -0.3634 -1.0247 -0.0774 22 1 -0.3634 0.5793 -0.8488 23 1 1.8934 -0.5139 0.8899 24 1 1.8934 -0.5139 -0.8901 25 1 3.8054 0.3893 3.1586 26 1 3.2683 1.5060 -2.5877 27 1 1.9507 2.9232 -4.3619 28 1 -0.8846 4.8887 -2.6289 29 1 -0.0720 4.6921 -4.2002 30 1 -2.0149 2.7835 -3.0729 31 1 -2.3410 3.8953 -4.2663 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152983.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:59 Heat of formation + Delta-G solvation = 42.181991 kcal Electronic energy + Delta-G solvation = -13791.681854 eV Core-core repulsion = 11494.395123 eV Total energy + Delta-G solvation = -2297.286731 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.91481 -37.21171 -35.43766 -33.88035 -31.71960 -30.65800 -28.88504 -26.26598 -24.82383 -22.77166 -21.36281 -20.39133 -18.46534 -17.83205 -16.73434 -16.27157 -16.11436 -15.40943 -15.13058 -14.63694 -14.61947 -13.92660 -13.52806 -13.48462 -13.11288 -13.05605 -12.80375 -12.64332 -12.14496 -12.10392 -11.76907 -11.45236 -11.20077 -10.64313 -10.06790 -9.57703 -9.21763 -8.32434 -6.46740 1.26607 1.40012 1.42462 1.53898 1.96770 2.02706 2.38362 2.99858 3.83397 3.98729 4.05908 4.28261 4.38004 4.47729 4.57676 4.62735 4.83795 4.95857 5.04976 5.10382 5.19276 5.32047 5.42175 5.55064 5.58889 5.86802 6.04306 6.18990 6.34037 6.64609 6.70713 7.13691 7.24102 8.76257 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.045183 B = 0.008783 C = 0.007846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.548129 B = 3187.297734 C = 3567.892186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.290 3.710 4 H 0.022 0.978 5 C -0.559 4.559 6 H 0.069 0.931 7 C 0.028 3.972 8 N -0.910 5.910 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.272 1.272 13 N -0.344 5.344 14 C 0.054 3.946 15 C -0.284 4.284 16 C 0.047 3.953 17 C 0.155 3.845 18 N -0.846 5.846 19 N -0.340 5.340 20 H 0.039 0.961 21 H 0.062 0.938 22 H 0.042 0.958 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.271 0.729 26 H 0.174 0.826 27 H 0.163 0.837 28 H 0.039 0.961 29 H 0.107 0.893 30 H 0.340 0.660 31 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 2.279 -8.979 10.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C 0.190 3.810 4 H 0.039 0.961 5 C -0.597 4.597 6 H 0.087 0.913 7 C -0.174 4.174 8 N -0.547 5.547 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.124 5.124 14 C -0.094 4.094 15 C -0.314 4.314 16 C -0.118 4.118 17 C 0.022 3.978 18 N -0.378 5.378 19 N -0.165 5.165 20 H 0.058 0.942 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.191 0.809 27 H 0.180 0.820 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.152 0.848 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.117 1.845 -8.005 9.189 hybrid contribution 0.815 0.294 0.540 1.021 sum -3.302 2.139 -7.464 8.438 Atomic orbital electron populations 1.21673 0.96102 1.00989 1.00545 1.21714 0.94901 0.97221 1.01231 1.18909 0.94867 0.89439 0.77795 0.96056 1.21515 0.90285 1.45200 1.02706 0.91283 1.25701 1.03450 0.94092 0.94145 1.70071 1.37861 1.43955 1.02832 0.85327 0.78665 0.78148 0.78486 1.18696 1.20674 1.19771 1.49297 1.15974 1.36532 1.10554 1.22774 0.99304 1.01009 0.86356 1.21477 0.99001 1.09220 1.01652 1.22612 0.97892 1.00046 0.91273 1.20002 0.88933 0.91152 0.97676 1.58618 1.13718 1.29453 1.36019 1.77092 1.06867 1.13435 1.19068 0.94174 0.91866 0.93895 0.91140 0.93535 0.92010 0.80857 0.81970 0.94307 0.87457 0.84777 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 9.85 71.98 0.71 -4.91 16 2 C -0.11 -5.25 5.50 30.60 0.17 -5.08 16 3 C 0.29 14.92 2.56 44.25 0.11 15.03 16 4 H 0.02 1.27 8.09 -2.39 -0.02 1.25 16 5 C -0.56 -29.63 8.28 25.60 0.21 -29.42 16 6 H 0.07 3.57 6.61 -2.91 -0.02 3.55 16 7 C 0.03 1.47 5.16 84.66 0.44 1.91 16 8 N -0.91 -50.23 12.15 21.45 0.26 -49.97 16 9 Si 0.97 41.22 29.55 68.60 2.03 43.25 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 N -0.34 -16.08 3.05 -331.08 -1.01 -17.09 16 14 C 0.05 2.24 10.33 83.54 0.86 3.10 16 15 C -0.28 -10.27 10.74 21.99 0.24 -10.03 16 16 C 0.05 1.73 6.73 43.10 0.29 2.02 16 17 C 0.15 4.17 7.35 85.56 0.63 4.80 16 18 N -0.85 -20.27 9.61 -190.01 -1.83 -22.10 16 19 N -0.34 -15.12 11.82 -47.38 -0.56 -15.68 16 20 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.04 1.81 6.98 -2.39 -0.02 1.79 16 23 H 0.07 3.58 6.79 -2.39 -0.02 3.56 16 24 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 26 H 0.17 6.56 7.47 -2.91 -0.02 6.54 16 27 H 0.16 4.76 8.06 -2.91 -0.02 4.73 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.34 8.83 8.99 -89.69 -0.81 8.02 16 31 H 0.36 6.10 9.08 -89.70 -0.81 5.29 16 Total: -1.00 -60.66 265.06 2.06 -58.59 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.48 Total: 25.59 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 3.66 Total: -22.58 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.14 Total: -104.84 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -60.66 2.06 -58.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152983.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.775 kcal (2) G-P(sol) polarization free energy of solvation -60.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds