Wall clock time and date at job start Sun Mar 29 2020 21:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 H 1.09003 * 109.47092 * 305.00112 * 3 2 1 5 5 C 1.50697 * 109.47150 * 185.00106 * 3 2 1 6 6 H 1.07997 * 120.00735 * 240.00341 * 5 3 2 7 7 C 1.37889 * 119.99991 * 59.99594 * 5 3 2 8 8 N 1.31515 * 119.99812 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00102 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47390 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47443 * 120.00060 * 9 7 5 12 12 H 1.48500 * 109.47499 * 240.00374 * 9 7 5 13 13 N 1.46492 * 109.47295 * 65.00133 * 3 2 1 14 14 C 1.34952 * 126.04136 * 84.99741 * 13 3 2 15 15 C 1.35313 * 107.75084 * 180.02562 * 14 13 3 16 16 C 1.50697 * 126.03935 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.47066 * 90.00100 * 16 15 14 18 18 C 1.39865 * 107.91976 * 0.26416 * 15 14 13 19 19 N 1.30839 * 108.20081 * 359.55311 * 18 15 14 20 20 H 1.09003 * 109.47342 * 300.00225 * 1 2 3 21 21 H 1.09003 * 109.47758 * 60.00057 * 1 2 3 22 22 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47124 * 240.00270 * 2 1 3 24 24 H 1.08996 * 109.47146 * 119.99748 * 2 1 3 25 25 H 0.96994 * 119.99658 * 179.97438 * 8 7 5 26 26 H 1.08004 * 126.11954 * 0.02562 * 14 13 3 27 27 H 1.09001 * 109.47558 * 330.00263 * 16 15 14 28 28 H 1.08998 * 109.47216 * 209.99925 * 16 15 14 29 29 H 1.00901 * 110.99869 * 56.04737 * 17 16 15 30 30 H 1.00896 * 110.99543 * 179.97438 * 17 16 15 31 31 H 1.07995 * 125.90143 * 179.73893 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3374 -2.1734 9 14 6.0048 0.8800 -1.3813 10 1 6.5988 1.5442 -0.1932 11 1 6.4961 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6524 2.0975 1.2517 14 6 2.3287 2.0440 2.4183 15 6 1.6436 2.7769 3.3263 16 6 2.0337 2.9956 4.7654 17 7 2.8796 4.1923 4.8670 18 6 0.5066 3.2912 2.6947 19 7 0.5140 2.8896 1.4495 20 1 -0.3634 0.5139 0.8900 21 1 -0.3635 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.8291 -0.0604 -2.9502 26 1 3.2515 1.5115 2.5954 27 1 2.5859 2.1286 5.1280 28 1 1.1361 3.1329 5.3683 29 1 2.4141 4.9983 4.4775 30 1 3.1543 4.3608 5.8232 31 1 -0.2458 3.9147 3.1544 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:01 Heat of formation + Delta-G solvation = 62.409388 kcal Electronic energy + Delta-G solvation = -13812.495999 eV Core-core repulsion = 11516.086394 eV Total energy + Delta-G solvation = -2296.409605 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.33107 -35.39349 -34.11648 -31.91281 -30.23880 -29.08542 -26.87386 -24.27510 -23.08222 -21.18064 -19.44876 -19.29900 -16.58360 -16.03391 -15.27198 -14.51193 -14.37812 -14.03991 -13.59799 -13.00126 -12.79759 -12.37065 -12.13366 -11.63612 -11.46141 -11.38028 -11.04232 -10.87908 -10.31660 -10.27381 -9.87333 -9.75267 -9.24926 -8.66654 -8.43065 -8.38586 -7.51948 -6.29763 -4.39756 2.92850 3.17891 3.26182 3.30805 3.48257 3.71073 4.26613 5.02955 5.08805 5.38663 5.63355 5.73582 6.02123 6.10152 6.14364 6.21171 6.39495 6.51027 6.81715 6.85968 6.92214 7.03126 7.26979 7.40127 7.51062 7.56514 7.68649 7.74180 7.88037 8.15933 8.67895 8.75324 9.28043 10.75982 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.010584 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.463633 B = 2644.749062 C = 3375.406620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.282 3.718 4 H 0.060 0.940 5 C -0.539 4.539 6 H 0.070 0.930 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.907 3.093 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.323 5.323 14 C 0.099 3.901 15 C -0.281 4.281 16 C 0.151 3.849 17 N -0.848 5.848 18 C 0.024 3.976 19 N -0.311 5.311 20 H 0.042 0.958 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.110 0.890 24 H 0.039 0.961 25 H 0.267 0.733 26 H 0.164 0.836 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.339 0.661 30 H 0.331 0.669 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 2.030 9.074 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.183 3.817 4 H 0.077 0.923 5 C -0.577 4.577 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.734 3.266 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.102 5.102 14 C -0.053 4.053 15 C -0.294 4.294 16 C 0.020 3.980 17 N -0.378 5.378 18 C -0.160 4.160 19 N -0.134 5.134 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.128 0.872 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.181 0.819 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.200 1.485 7.126 7.604 hybrid contribution 0.606 0.333 1.188 1.375 sum -1.594 1.819 8.314 8.658 Atomic orbital electron populations 1.21793 0.98244 0.99360 1.00943 1.21977 0.92922 0.98449 1.03362 1.19295 0.95349 0.89202 0.77809 0.92267 1.21323 0.89577 1.39728 1.07100 0.91210 1.24881 0.99262 0.94294 0.94966 1.69872 1.35473 1.37345 1.09368 0.86277 0.83934 0.77942 0.78440 1.19374 1.20641 1.20667 1.49539 1.15271 1.34892 1.10474 1.22164 0.97759 0.99263 0.86113 1.19706 1.00192 1.12111 0.97348 1.19791 0.93649 0.92842 0.91746 1.58779 1.47989 1.07031 1.23952 1.23407 0.98557 1.01790 0.92267 1.77219 1.06462 1.12126 1.17578 0.93885 0.93440 0.94565 0.87160 0.94215 0.92260 0.81902 0.91374 0.95894 0.84885 0.85749 0.82011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.80 37.16 0.36 -2.69 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.28 7.09 2.70 -69.09 -0.19 6.90 16 4 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 5 C -0.54 -14.17 8.30 -34.44 -0.29 -14.46 16 6 H 0.07 1.84 6.73 -52.49 -0.35 1.48 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -23.72 11.29 55.43 0.63 -23.10 16 9 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.32 -7.47 3.05 -56.00 -0.17 -7.64 16 14 C 0.10 2.07 10.22 -17.22 -0.18 1.90 16 15 C -0.28 -5.12 5.61 -105.06 -0.59 -5.71 16 16 C 0.15 2.16 7.27 -4.97 -0.04 2.13 16 17 N -0.85 -11.33 9.61 -11.41 -0.11 -11.44 16 18 C 0.02 0.46 11.96 -17.37 -0.21 0.25 16 19 N -0.31 -6.91 11.99 30.62 0.37 -6.54 16 20 H 0.04 0.91 7.21 -51.93 -0.37 0.54 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.11 2.80 5.95 -51.93 -0.31 2.49 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.16 3.29 7.56 -52.48 -0.40 2.89 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.34 4.36 8.99 -39.29 -0.35 4.01 16 30 H 0.33 3.46 9.08 -39.29 -0.36 3.10 16 31 H 0.16 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 264.14 15.07 3.98 3.98 Total: -1.00 -28.04 264.14 -5.92 -33.97 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.24 Total: 8.51 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.36 Total: -13.11 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.71 Total: -48.72 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.04 -5.92 -33.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.376 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds