Wall clock time and date at job start Sun Mar 29 2020 21:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 H 1.09003 * 109.47092 * 305.00112 * 3 2 1 5 5 C 1.50697 * 109.47150 * 185.00106 * 3 2 1 6 6 H 1.07997 * 120.00735 * 240.00341 * 5 3 2 7 7 C 1.37889 * 119.99991 * 59.99594 * 5 3 2 8 8 N 1.31515 * 119.99812 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00102 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47390 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47443 * 120.00060 * 9 7 5 12 12 H 1.48500 * 109.47499 * 240.00374 * 9 7 5 13 13 N 1.46492 * 109.47295 * 65.00133 * 3 2 1 14 14 C 1.34952 * 126.04136 * 84.99741 * 13 3 2 15 15 C 1.35313 * 107.75084 * 180.02562 * 14 13 3 16 16 C 1.50697 * 126.03935 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.47066 * 90.00100 * 16 15 14 18 18 C 1.39865 * 107.91976 * 0.26416 * 15 14 13 19 19 N 1.30839 * 108.20081 * 359.55311 * 18 15 14 20 20 H 1.09003 * 109.47342 * 300.00225 * 1 2 3 21 21 H 1.09003 * 109.47758 * 60.00057 * 1 2 3 22 22 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47124 * 240.00270 * 2 1 3 24 24 H 1.08996 * 109.47146 * 119.99748 * 2 1 3 25 25 H 0.96994 * 119.99658 * 179.97438 * 8 7 5 26 26 H 1.08004 * 126.11954 * 0.02562 * 14 13 3 27 27 H 1.09001 * 109.47558 * 330.00263 * 16 15 14 28 28 H 1.08998 * 109.47216 * 209.99925 * 16 15 14 29 29 H 1.00901 * 110.99869 * 56.04737 * 17 16 15 30 30 H 1.00896 * 110.99543 * 179.97438 * 17 16 15 31 31 H 1.07995 * 125.90143 * 179.73893 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3374 -2.1734 9 14 6.0048 0.8800 -1.3813 10 1 6.5988 1.5442 -0.1932 11 1 6.4961 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6524 2.0975 1.2517 14 6 2.3287 2.0440 2.4183 15 6 1.6436 2.7769 3.3263 16 6 2.0337 2.9956 4.7654 17 7 2.8796 4.1923 4.8670 18 6 0.5066 3.2912 2.6947 19 7 0.5140 2.8896 1.4495 20 1 -0.3634 0.5139 0.8900 21 1 -0.3635 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.8291 -0.0604 -2.9502 26 1 3.2515 1.5115 2.5954 27 1 2.5859 2.1286 5.1280 28 1 1.1361 3.1329 5.3683 29 1 2.4141 4.9983 4.4775 30 1 3.1543 4.3608 5.8232 31 1 -0.2458 3.9147 3.1544 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:01 Heat of formation + Delta-G solvation = 43.448592 kcal Electronic energy + Delta-G solvation = -13813.318201 eV Core-core repulsion = 11516.086394 eV Total energy + Delta-G solvation = -2297.231807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.92791 -37.15994 -35.40893 -33.83551 -31.92915 -30.54594 -28.73484 -25.83820 -24.70390 -22.87219 -21.12079 -20.92156 -18.49978 -17.64757 -16.70255 -16.17339 -15.92503 -15.53516 -15.13126 -14.55675 -14.43385 -13.93977 -13.78502 -13.30025 -13.05046 -12.96084 -12.84274 -12.68343 -12.15262 -12.08358 -11.74348 -11.34424 -11.13606 -10.64766 -10.08367 -9.48164 -9.06163 -8.29064 -6.46748 1.30114 1.40055 1.42339 1.54071 1.99539 2.05139 2.39075 3.01085 3.97448 4.06942 4.23886 4.32775 4.42199 4.50153 4.56522 4.68190 4.81580 4.95703 5.03896 5.15414 5.23969 5.39546 5.42958 5.58477 5.68785 5.93011 6.08617 6.33974 6.40356 6.70464 6.80951 7.13860 7.25012 8.76612 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.010584 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.463633 B = 2644.749062 C = 3375.406620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.120 4.120 3 C 0.291 3.709 4 H 0.019 0.981 5 C -0.555 4.555 6 H 0.064 0.936 7 C 0.028 3.972 8 N -0.908 5.908 9 Si 0.971 3.029 10 H -0.268 1.268 11 H -0.272 1.272 12 H -0.279 1.279 13 N -0.345 5.345 14 C 0.074 3.926 15 C -0.264 4.264 16 C 0.154 3.846 17 N -0.859 5.859 18 C 0.033 3.967 19 N -0.347 5.347 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.039 0.961 25 H 0.271 0.729 26 H 0.162 0.838 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.342 0.658 30 H 0.350 0.650 31 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 2.381 10.807 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.159 4.159 3 C 0.191 3.809 4 H 0.037 0.963 5 C -0.594 4.594 6 H 0.082 0.918 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.795 3.205 10 H -0.192 1.192 11 H -0.197 1.197 12 H -0.204 1.204 13 N -0.125 5.125 14 C -0.076 4.076 15 C -0.277 4.277 16 C 0.023 3.977 17 N -0.391 5.391 18 C -0.151 4.151 19 N -0.170 5.170 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.108 0.892 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.180 0.820 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.986 1.842 8.891 9.295 hybrid contribution 0.491 0.296 0.727 0.926 sum -1.495 2.138 9.618 9.966 Atomic orbital electron populations 1.21652 0.96296 1.00771 1.00326 1.21804 0.94596 0.97304 1.02161 1.18912 0.94599 0.89560 0.77872 0.96340 1.21509 0.90396 1.40109 1.07342 0.91809 1.25659 1.03465 0.93766 0.94512 1.69974 1.37156 1.37627 1.09743 0.85308 0.78745 0.78233 0.78228 1.19203 1.19682 1.20448 1.49300 1.16421 1.36397 1.10385 1.22450 0.98316 1.00599 0.86240 1.20138 0.99001 1.09799 0.98749 1.19815 0.95080 0.93568 0.89208 1.58673 1.47951 1.06833 1.25646 1.24108 0.99134 1.00768 0.91132 1.77184 1.06794 1.13220 1.19757 0.94209 0.94227 0.92042 0.89229 0.94247 0.91955 0.82022 0.90903 0.93237 0.84504 0.83631 0.78019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 9.80 71.98 0.71 -4.88 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.57 16 3 C 0.29 15.09 2.70 44.25 0.12 15.21 16 4 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.56 -29.90 8.30 25.60 0.21 -29.69 16 6 H 0.06 3.43 6.73 -2.91 -0.02 3.41 16 7 C 0.03 1.46 5.29 84.66 0.45 1.90 16 8 N -0.91 -49.64 11.29 21.45 0.24 -49.40 16 9 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.35 -16.20 3.05 -331.07 -1.01 -17.21 16 14 C 0.07 3.09 10.22 83.54 0.85 3.94 16 15 C -0.26 -9.11 5.61 -20.15 -0.11 -9.23 16 16 C 0.15 3.92 7.27 85.55 0.62 4.54 16 17 N -0.86 -20.35 9.61 -190.00 -1.83 -22.18 16 18 C 0.03 1.17 11.96 85.23 1.02 2.19 16 19 N -0.35 -15.31 11.99 -57.03 -0.68 -15.99 16 20 H 0.04 1.67 7.21 -2.39 -0.02 1.65 16 21 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.09 4.67 5.95 -2.39 -0.01 4.66 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 26 H 0.16 6.58 7.56 -2.91 -0.02 6.55 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.34 7.78 8.99 -89.69 -0.81 6.97 16 30 H 0.35 6.15 9.08 -89.70 -0.81 5.33 16 31 H 0.20 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -60.65 264.14 2.30 -58.35 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.48 Total: 24.06 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 4.03 Total: -21.58 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.28 Total: -104.78 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -60.65 2.30 -58.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.794 kcal (2) G-P(sol) polarization free energy of solvation -60.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds