Wall clock time and date at job start Sun Mar 29 2020 21:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47569 * 2 1 4 4 C 1.53007 * 109.47050 * 240.00300 * 2 1 3 5 5 C 1.50697 * 109.47025 * 174.99990 * 4 2 1 6 6 C 1.34513 * 125.79163 * 89.71826 * 5 4 2 7 7 C 1.41383 * 106.84445 * 179.88468 * 6 5 4 8 8 C 1.34516 * 106.83703 * 0.37638 * 7 6 5 9 9 O 1.34302 * 125.78939 * 270.02255 * 5 4 2 10 10 N 1.46501 * 109.47457 * 120.00545 * 2 1 3 11 11 C 1.46498 * 119.99759 * 59.99519 * 10 2 1 12 12 C 1.36936 * 119.99936 * 239.99946 * 10 2 1 13 13 H 1.07992 * 119.99973 * 339.58225 * 12 10 2 14 14 C 1.38810 * 119.99861 * 159.30513 * 12 10 2 15 15 N 1.31623 * 120.00231 * 345.40496 * 14 12 10 16 16 Si 1.86800 * 119.99926 * 165.40622 * 14 12 10 17 17 H 1.48495 * 109.46888 * 94.70763 * 16 14 12 18 18 H 1.48504 * 109.47070 * 214.70066 * 16 14 12 19 19 H 1.48493 * 109.47232 * 334.70546 * 16 14 12 20 20 H 1.09000 * 109.46528 * 299.99554 * 1 2 3 21 21 H 1.08997 * 109.47160 * 59.99381 * 1 2 3 22 22 H 1.08993 * 109.47138 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46846 * 295.00025 * 4 2 1 24 24 H 1.09003 * 109.46671 * 55.00022 * 4 2 1 25 25 H 1.07999 * 126.57673 * 0.02592 * 6 5 4 26 26 H 1.07999 * 126.57786 * 180.11675 * 7 6 5 27 27 H 1.07998 * 125.78591 * 179.79212 * 8 7 6 28 28 H 1.09004 * 109.47562 * 264.88018 * 11 10 2 29 29 H 1.09001 * 109.47678 * 24.88435 * 11 10 2 30 30 H 1.09006 * 109.47036 * 144.88572 * 11 10 2 31 31 H 0.97000 * 120.00224 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 6 4.4156 -1.4820 -0.7705 7 6 5.7105 -1.0009 -1.0712 8 6 5.5507 0.1360 -1.7722 9 8 4.2351 0.3649 -1.9155 10 7 2.0184 -0.6907 1.1961 11 6 1.6644 -2.0933 1.4278 12 6 2.8057 -0.0253 2.0975 13 1 3.3361 0.8660 1.7966 14 6 2.9175 -0.4931 3.3996 15 7 2.0647 -1.3873 3.8531 16 14 4.2783 0.1463 4.5082 17 1 3.7615 1.2722 5.3270 18 1 4.7414 -0.9447 5.4030 19 1 5.4134 0.6195 3.6760 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.7516 -1.7714 -1.2057 24 1 1.6053 -0.2616 -2.1370 25 1 4.1741 -2.3757 -0.2142 26 1 6.6481 -1.4564 -0.7884 27 1 6.3456 0.7589 -2.1551 28 1 0.7890 -2.1450 2.0752 29 1 1.4408 -2.5738 0.4753 30 1 2.5002 -2.6048 1.9054 31 1 2.1431 -1.7145 4.7629 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258193144.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:55 Heat of formation + Delta-G solvation = 16.892545 kcal Electronic energy + Delta-G solvation = -14220.504770 eV Core-core repulsion = 11889.828655 eV Total energy + Delta-G solvation = -2330.676115 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.27850 -38.40897 -34.72714 -33.67370 -31.90980 -30.51456 -27.99166 -26.93707 -24.93417 -22.49120 -21.63247 -20.55474 -18.82597 -18.07022 -17.02320 -16.76155 -15.88297 -15.58125 -14.83295 -14.56121 -14.27384 -13.74636 -13.60657 -13.42881 -13.12051 -12.95343 -12.63064 -12.46000 -12.32619 -12.20352 -12.09477 -11.68423 -11.50574 -10.64983 -10.60774 -9.17055 -8.70721 -7.78066 -5.20462 1.01488 1.42569 1.44380 1.53649 1.90845 2.29660 2.52413 3.35120 3.69194 3.96375 4.22709 4.30008 4.40324 4.56603 4.60407 4.77255 4.78728 5.00693 5.05483 5.11265 5.19547 5.27724 5.36777 5.48188 5.56565 5.67541 5.78426 5.79610 6.36735 6.41438 7.21199 7.95214 8.36605 9.24991 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.013570 C = 0.010220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.088315 B = 2062.881227 C = 2739.126508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 H 0.049 0.951 4 C -0.047 4.047 5 C -0.003 4.003 6 C -0.213 4.213 7 C -0.231 4.231 8 C -0.054 4.054 9 O -0.193 6.193 10 N -0.601 5.601 11 C 0.183 3.817 12 C -0.238 4.238 13 H 0.056 0.944 14 C -0.054 4.054 15 N -0.938 5.938 16 Si 0.955 3.045 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.277 1.277 20 H 0.033 0.967 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.126 0.874 26 H 0.157 0.843 27 H 0.238 0.762 28 H 0.002 0.998 29 H 0.032 0.968 30 H 0.010 0.990 31 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 1.329 -11.718 12.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.060 3.940 3 H 0.068 0.932 4 C -0.086 4.086 5 C -0.053 4.053 6 C -0.232 4.232 7 C -0.250 4.250 8 C -0.120 4.120 9 O -0.090 6.090 10 N -0.324 5.324 11 C 0.038 3.962 12 C -0.369 4.369 13 H 0.074 0.926 14 C -0.248 4.248 15 N -0.586 5.586 16 Si 0.785 3.215 17 H -0.215 1.215 18 H -0.220 1.220 19 H -0.202 1.202 20 H 0.052 0.948 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.144 0.856 26 H 0.175 0.825 27 H 0.254 0.746 28 H 0.020 0.980 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.543 1.493 -11.718 12.083 hybrid contribution 0.889 -0.085 1.397 1.658 sum 3.432 1.407 -10.321 10.967 Atomic orbital electron populations 1.22125 0.95795 1.01621 1.01172 1.20546 0.93264 0.94655 0.85504 0.93228 1.20719 0.84742 1.03204 0.99941 1.22530 0.95474 0.88395 0.98863 1.21513 0.93240 1.03292 1.05200 1.22073 0.98766 0.99266 1.04880 1.24584 0.83128 0.99775 1.04536 1.83943 1.18983 1.44389 1.61732 1.44053 1.58109 1.08200 1.22016 1.20424 0.97298 0.83747 0.94705 1.19305 1.18741 1.08554 0.90300 0.92648 1.25523 1.00705 1.00770 0.97798 1.70228 1.37068 1.35515 1.15778 0.85425 0.80049 0.77119 0.78952 1.21454 1.21988 1.20205 0.94763 0.90207 0.92903 0.88919 0.88005 0.85642 0.82529 0.74629 0.97993 0.94978 0.97108 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.19 71.98 0.66 -4.40 16 2 C 0.17 6.64 2.70 44.99 0.12 6.76 16 3 H 0.05 2.09 7.85 -2.39 -0.02 2.07 16 4 C -0.05 -1.57 5.18 29.85 0.15 -1.41 16 5 C 0.00 -0.11 6.33 24.83 0.16 0.05 16 6 C -0.21 -8.24 10.68 22.19 0.24 -8.00 16 7 C -0.23 -7.66 10.91 22.19 0.24 -7.41 16 8 C -0.05 -1.59 12.09 66.97 0.81 -0.78 16 9 O -0.19 -6.72 10.65 -2.49 -0.03 -6.74 16 10 N -0.60 -29.65 2.42 -702.77 -1.70 -31.35 16 11 C 0.18 8.96 8.00 127.77 1.02 9.98 16 12 C -0.24 -13.32 9.61 84.03 0.81 -12.52 16 13 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 14 C -0.05 -3.07 5.07 84.86 0.43 -2.64 16 15 N -0.94 -56.31 10.66 21.65 0.23 -56.08 16 16 Si 0.96 46.75 29.58 68.60 2.03 48.77 16 17 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 18 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.05 1.76 7.67 -2.39 -0.02 1.74 16 23 H 0.09 2.95 6.49 -2.39 -0.02 2.94 16 24 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.13 5.15 8.06 -2.91 -0.02 5.12 16 26 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.24 4.47 8.06 -2.91 -0.02 4.44 16 28 H 0.00 0.10 7.39 -2.39 -0.02 0.08 16 29 H 0.03 1.31 6.36 -2.39 -0.02 1.30 16 30 H 0.01 0.56 7.23 -2.38 -0.02 0.54 16 31 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -65.94 262.10 6.27 -59.66 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.10 Total: 6.12 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 4.64 Total: -20.38 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -1.47 Total: -87.43 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.03 Total: -6.74 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -65.94 6.27 -59.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258193144.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.556 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds