Wall clock time and date at job start Sun Mar 29 2020 21:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99890 * 2 1 4 4 C 1.52996 * 109.47169 * 239.99854 * 3 2 1 5 5 O 1.42901 * 109.47161 * 0.02562 * 3 2 1 6 6 C 1.50706 * 109.46875 * 119.99905 * 3 2 1 7 7 C 1.34945 * 125.49011 * 300.00416 * 6 3 2 8 8 N 1.36668 * 106.72577 * 180.20717 * 7 6 3 9 9 C 1.37573 * 126.88380 * 179.77552 * 8 7 6 10 10 H 1.08000 * 119.99677 * 359.97438 * 9 8 7 11 11 C 1.39001 * 120.00084 * 179.97438 * 9 8 7 12 12 N 1.31254 * 120.00176 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47176 * 60.00097 * 13 11 9 15 15 H 1.48500 * 109.47156 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47248 * 300.00130 * 13 11 9 17 17 N 1.40321 * 106.22714 * 359.64622 * 8 7 6 18 18 N 1.28756 * 108.03280 * 0.36116 * 17 8 7 19 19 H 1.07998 * 120.00042 * 180.02562 * 1 2 3 20 20 H 1.08002 * 120.00023 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.00023 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.47560 * 300.00178 * 4 3 2 23 23 H 1.09004 * 109.46725 * 60.00365 * 4 3 2 24 24 H 1.09003 * 109.47162 * 179.97438 * 4 3 2 25 25 H 0.96692 * 114.00344 * 59.99605 * 5 3 2 26 26 H 1.08002 * 126.63240 * 359.93419 * 7 6 3 27 27 H 0.97000 * 120.00647 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9299 1.3849 1.2305 7 6 2.4869 1.3440 2.5046 8 7 3.5879 1.4502 3.3074 9 6 3.6091 1.4581 4.6829 10 1 2.6862 1.3748 5.2376 11 6 4.8183 1.5733 5.3587 12 7 5.9399 1.6741 4.6845 13 14 4.8470 1.5848 7.2264 14 1 4.2696 0.3160 7.7382 15 1 6.2485 1.7175 7.6991 16 1 4.0458 2.7306 7.7268 17 7 4.6924 1.5465 2.4474 18 7 4.2588 1.5069 1.2357 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5400 0.9353 0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 3.6515 0.5577 -1.2493 23 1 2.3164 1.3285 -2.1392 24 1 3.4878 2.3304 -1.2494 25 1 0.5438 2.4030 0.7658 26 1 1.4605 1.2503 2.8273 27 1 6.7837 1.7549 5.1561 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262023202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:58 Heat of formation + Delta-G solvation = 59.612009 kcal Electronic energy + Delta-G solvation = -13549.940880 eV Core-core repulsion = 11117.576877 eV Total energy + Delta-G solvation = -2432.364003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.27903 -37.58793 -34.12371 -32.47523 -31.44276 -30.12604 -28.21021 -25.58400 -22.98750 -21.20958 -20.16450 -19.11861 -17.94806 -16.32645 -15.59683 -15.33383 -14.34153 -14.01824 -13.53670 -13.24548 -12.57983 -12.04929 -11.86074 -11.68577 -11.53205 -11.42074 -11.19219 -10.90328 -10.65038 -10.16364 -9.94871 -9.53305 -9.27402 -8.95640 -8.74201 -7.48095 -6.85675 -4.67178 2.57836 2.80521 2.92901 2.98054 3.28745 3.66022 3.97058 4.58890 4.77317 4.90074 5.23444 5.54479 5.66262 5.77876 6.10944 6.22672 6.32195 6.49447 6.67743 6.72459 6.82932 6.88825 7.00340 7.14818 7.70135 7.86023 8.11107 8.46553 9.06982 10.10859 10.15967 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.057401 B = 0.008454 C = 0.007802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.675740 B = 3311.081766 C = 3587.902442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.250 3.750 4 C -0.115 4.115 5 O -0.557 6.557 6 C -0.095 4.095 7 C -0.111 4.111 8 N -0.145 5.145 9 C -0.315 4.315 10 H 0.120 0.880 11 C 0.047 3.953 12 N -0.759 5.759 13 Si 0.943 3.057 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.263 1.263 17 N -0.092 5.092 18 N -0.314 5.314 19 H 0.094 0.906 20 H 0.101 0.899 21 H 0.111 0.889 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.371 0.629 26 H 0.152 0.848 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 -2.069 -1.608 7.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.172 4.172 3 C 0.207 3.793 4 C -0.172 4.172 5 O -0.362 6.362 6 C -0.243 4.243 7 C -0.266 4.266 8 N 0.084 4.916 9 C -0.452 4.452 10 H 0.138 0.862 11 C -0.173 4.173 12 N -0.385 5.385 13 Si 0.766 3.234 14 H -0.188 1.188 15 H -0.198 1.198 16 H -0.188 1.188 17 N -0.069 5.069 18 N -0.174 5.174 19 H 0.112 0.888 20 H 0.119 0.881 21 H 0.129 0.871 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.218 0.782 26 H 0.170 0.830 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.318 -1.747 -2.330 6.063 hybrid contribution -1.419 -0.347 1.791 2.311 sum -6.737 -2.093 -0.539 7.075 Atomic orbital electron populations 1.23683 0.95893 1.01704 1.02880 1.23603 0.96318 0.99174 0.98117 1.18014 0.85948 0.83161 0.92138 1.21446 0.98125 1.03497 0.94172 1.86515 1.50500 1.50338 1.48805 1.21066 0.92224 1.17758 0.93269 1.22181 0.93423 1.20015 0.90956 1.46702 1.04793 1.33313 1.06793 1.20119 0.96256 1.51761 0.77052 0.86204 1.25787 0.94420 0.94813 1.02248 1.70130 0.98543 1.32356 1.37482 0.85747 0.78586 0.79801 0.79284 1.18807 1.19790 1.18792 1.82555 1.05304 1.28669 0.90359 1.73983 1.09356 1.17537 1.16544 0.88794 0.88051 0.87063 0.90999 0.93033 0.91495 0.78153 0.83048 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.79 13.93 29.01 0.40 -2.39 15 2 C -0.15 -2.49 8.58 -36.03 -0.31 -2.80 15 3 C 0.25 4.75 1.26 -92.92 -0.12 4.63 15 4 C -0.12 -2.08 8.29 37.16 0.31 -1.77 15 5 O -0.56 -9.98 11.93 -35.23 -0.42 -10.40 15 6 C -0.10 -2.25 5.80 -83.05 -0.48 -2.73 15 7 C -0.11 -2.64 11.03 -16.57 -0.18 -2.82 15 8 N -0.15 -3.98 3.78 -11.47 -0.04 -4.02 15 9 C -0.32 -8.11 10.31 -14.69 -0.15 -8.26 15 10 H 0.12 2.71 7.83 -52.49 -0.41 2.30 15 11 C 0.05 1.17 5.50 -17.52 -0.10 1.08 15 12 N -0.76 -20.50 11.89 55.49 0.66 -19.84 15 13 Si 0.94 18.00 29.55 -169.99 -5.02 12.97 15 14 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 15 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 16 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 17 N -0.09 -2.71 11.73 60.35 0.71 -2.00 15 18 N -0.31 -8.55 11.60 33.16 0.38 -8.17 15 19 H 0.09 1.10 8.06 -52.49 -0.42 0.68 15 20 H 0.10 1.29 6.41 -52.49 -0.34 0.96 15 21 H 0.11 1.80 8.06 -52.49 -0.42 1.37 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.37 5.52 7.86 45.56 0.36 5.87 15 26 H 0.15 3.00 8.06 -52.49 -0.42 2.58 15 27 H 0.28 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 245.50 15.07 3.70 3.70 Total: -1.00 -31.33 245.50 -2.72 -34.05 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -2.06 Total: 8.79 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.63 Total: -15.08 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 1.71 Total: -34.03 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.42 Total: -10.40 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.97 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.33 -2.72 -34.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262023202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.660 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds