Wall clock time and date at job start Sun Mar 29 2020 21:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99890 * 2 1 4 4 C 1.52996 * 109.47169 * 239.99854 * 3 2 1 5 5 O 1.42901 * 109.47161 * 0.02562 * 3 2 1 6 6 C 1.50706 * 109.46875 * 119.99905 * 3 2 1 7 7 C 1.34945 * 125.49011 * 300.00416 * 6 3 2 8 8 N 1.36668 * 106.72577 * 180.20717 * 7 6 3 9 9 C 1.37573 * 126.88380 * 179.77552 * 8 7 6 10 10 H 1.08000 * 119.99677 * 359.97438 * 9 8 7 11 11 C 1.39001 * 120.00084 * 179.97438 * 9 8 7 12 12 N 1.31254 * 120.00176 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47176 * 60.00097 * 13 11 9 15 15 H 1.48500 * 109.47156 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47248 * 300.00130 * 13 11 9 17 17 N 1.40321 * 106.22714 * 359.64622 * 8 7 6 18 18 N 1.28756 * 108.03280 * 0.36116 * 17 8 7 19 19 H 1.07998 * 120.00042 * 180.02562 * 1 2 3 20 20 H 1.08002 * 120.00023 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.00023 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.47560 * 300.00178 * 4 3 2 23 23 H 1.09004 * 109.46725 * 60.00365 * 4 3 2 24 24 H 1.09003 * 109.47162 * 179.97438 * 4 3 2 25 25 H 0.96692 * 114.00344 * 59.99605 * 5 3 2 26 26 H 1.08002 * 126.63240 * 359.93419 * 7 6 3 27 27 H 0.97000 * 120.00647 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9299 1.3849 1.2305 7 6 2.4869 1.3440 2.5046 8 7 3.5879 1.4502 3.3074 9 6 3.6091 1.4581 4.6829 10 1 2.6862 1.3748 5.2376 11 6 4.8183 1.5733 5.3587 12 7 5.9399 1.6741 4.6845 13 14 4.8470 1.5848 7.2264 14 1 4.2696 0.3160 7.7382 15 1 6.2485 1.7175 7.6991 16 1 4.0458 2.7306 7.7268 17 7 4.6924 1.5465 2.4474 18 7 4.2588 1.5069 1.2357 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5400 0.9353 0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 3.6515 0.5577 -1.2493 23 1 2.3164 1.3285 -2.1392 24 1 3.4878 2.3304 -1.2494 25 1 0.5438 2.4030 0.7658 26 1 1.4605 1.2503 2.8273 27 1 6.7837 1.7549 5.1561 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262023202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:58 Heat of formation + Delta-G solvation = 35.906221 kcal Electronic energy + Delta-G solvation = -13550.968840 eV Core-core repulsion = 11117.576877 eV Total energy + Delta-G solvation = -2433.391963 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.17428 -39.05865 -36.01282 -33.83589 -33.32968 -31.63109 -29.97482 -27.50455 -24.52637 -23.12764 -21.85569 -20.56515 -19.70775 -17.77785 -17.44457 -16.84167 -15.94749 -15.74544 -15.25791 -14.93167 -13.97466 -13.74264 -13.37220 -13.31437 -13.04553 -12.98327 -12.60416 -12.28064 -12.12525 -11.90691 -11.70033 -11.24313 -11.00065 -10.67029 -10.26742 -9.39087 -8.71260 -6.65896 1.08771 1.36537 1.40507 1.55790 1.64075 2.05810 2.10942 2.74740 2.90648 3.49664 3.89946 4.02712 4.21415 4.47450 4.49670 4.77126 4.88267 4.96525 5.02179 5.14766 5.19981 5.33272 5.69523 5.87625 5.91502 5.95105 6.57712 6.82579 7.15280 8.18095 8.29608 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.057401 B = 0.008454 C = 0.007802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.675740 B = 3311.081766 C = 3587.902442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.184 4.184 3 C 0.252 3.748 4 C -0.114 4.114 5 O -0.560 6.560 6 C -0.089 4.089 7 C -0.117 4.117 8 N -0.162 5.162 9 C -0.344 4.344 10 H 0.148 0.852 11 C -0.001 4.001 12 N -0.810 5.810 13 Si 1.029 2.971 14 H -0.249 1.249 15 H -0.273 1.273 16 H -0.250 1.250 17 N -0.153 5.153 18 N -0.346 5.346 19 H 0.120 0.880 20 H 0.114 0.886 21 H 0.107 0.893 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.385 0.615 26 H 0.191 0.809 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 -2.527 -0.570 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.203 4.203 3 C 0.209 3.791 4 C -0.172 4.172 5 O -0.366 6.366 6 C -0.238 4.238 7 C -0.271 4.271 8 N 0.067 4.933 9 C -0.480 4.480 10 H 0.165 0.835 11 C -0.216 4.216 12 N -0.437 5.437 13 Si 0.846 3.154 14 H -0.173 1.173 15 H -0.198 1.198 16 H -0.174 1.174 17 N -0.129 5.129 18 N -0.205 5.205 19 H 0.138 0.862 20 H 0.132 0.868 21 H 0.125 0.875 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.234 0.766 26 H 0.208 0.792 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.857 -2.204 -1.328 8.267 hybrid contribution -0.779 -0.199 1.397 1.612 sum -8.636 -2.403 0.069 8.964 Atomic orbital electron populations 1.23983 0.94761 1.03528 0.98085 1.23321 0.97160 0.97343 1.02483 1.18053 0.85914 0.85005 0.90083 1.21434 0.98336 1.01987 0.95404 1.86494 1.50378 1.50179 1.49583 1.21984 0.91546 1.14927 0.95382 1.22910 0.94417 1.19027 0.90760 1.47058 1.05311 1.33366 1.07609 1.20989 0.98028 1.51997 0.76975 0.83469 1.27121 0.93365 0.93106 1.08041 1.70296 0.99601 1.33594 1.40184 0.84512 0.78704 0.80653 0.71550 1.17274 1.19770 1.17357 1.82504 1.07091 1.31950 0.91395 1.73943 1.11463 1.18952 1.16168 0.86206 0.86774 0.87537 0.91669 0.90260 0.93725 0.76553 0.79212 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 13.93 67.78 0.94 -2.91 15 2 C -0.18 -5.56 8.58 25.64 0.22 -5.34 15 3 C 0.25 9.28 1.26 -12.29 -0.02 9.26 15 4 C -0.11 -4.11 8.29 71.98 0.60 -3.51 15 5 O -0.56 -18.81 11.93 -148.98 -1.78 -20.59 15 6 C -0.09 -4.23 5.80 41.56 0.24 -3.98 15 7 C -0.12 -5.50 11.03 83.18 0.92 -4.58 15 8 N -0.16 -8.97 3.78 -190.22 -0.72 -9.68 15 9 C -0.34 -17.59 10.31 83.98 0.87 -16.72 15 10 H 0.15 6.40 7.83 -2.91 -0.02 6.38 15 11 C 0.00 -0.07 5.50 84.96 0.47 0.40 15 12 N -0.81 -44.96 11.89 21.66 0.26 -44.71 15 13 Si 1.03 35.95 29.55 68.60 2.03 37.98 15 14 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 15 H -0.27 -9.41 7.11 99.48 0.71 -8.71 15 16 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 17 N -0.15 -9.40 11.73 37.02 0.43 -8.96 15 18 N -0.35 -19.54 11.60 -48.99 -0.57 -20.11 15 19 H 0.12 2.21 8.06 -2.91 -0.02 2.18 15 20 H 0.11 2.36 6.41 -2.91 -0.02 2.35 15 21 H 0.11 3.30 8.06 -2.91 -0.02 3.27 15 22 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.08 2.35 8.14 -2.38 -0.02 2.33 15 24 H 0.04 1.75 8.14 -2.39 -0.02 1.74 15 25 H 0.38 10.27 7.86 -74.06 -0.58 9.69 15 26 H 0.19 7.04 8.06 -2.91 -0.02 7.02 15 27 H 0.29 14.50 8.31 -92.71 -0.77 13.73 15 Total: -1.00 -70.40 245.50 4.49 -65.91 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.60 Total: 27.55 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.24 Total: -27.38 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -0.60 Total: -83.46 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -1.78 Total: -20.59 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -70.40 4.49 -65.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262023202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.816 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds