Wall clock time and date at job start Sun Mar 29 2020 21:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53010 * 109.46881 * 120.27744 * 3 2 1 5 5 O 1.42896 * 109.47289 * 0.27807 * 3 2 1 6 6 C 1.50694 * 109.47297 * 240.27389 * 3 2 1 7 7 C 1.34947 * 125.48719 * 64.72800 * 6 3 2 8 8 N 1.36667 * 106.73063 * 179.84362 * 7 6 3 9 9 C 1.37569 * 126.88759 * 180.14811 * 8 7 6 10 10 H 1.08007 * 119.99942 * 0.32758 * 9 8 7 11 11 C 1.39011 * 120.00198 * 180.32937 * 9 8 7 12 12 N 1.31253 * 119.99803 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00201 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47294 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47120 * 120.00231 * 13 11 9 16 16 H 1.48506 * 109.47372 * 240.00170 * 13 11 9 17 17 N 1.40323 * 106.22765 * 0.39834 * 8 7 6 18 18 N 1.28757 * 108.02814 * 359.75118 * 17 8 7 19 19 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 20 20 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 21 21 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 22 22 H 1.08996 * 109.46879 * 59.99757 * 4 3 2 23 23 H 1.08996 * 109.46838 * 180.02562 * 4 3 2 24 24 H 1.09004 * 109.46811 * 299.99835 * 4 3 2 25 25 H 0.96698 * 114.00174 * 299.99666 * 5 3 2 26 26 H 1.08005 * 126.63257 * 359.97438 * 7 6 3 27 27 H 0.97004 * 120.00055 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9483 1.3831 1.2458 5 8 1.1348 2.3912 0.0065 6 6 2.9247 1.3880 -1.2338 7 6 2.4712 1.4407 -2.5037 8 7 3.5711 1.5115 -3.3116 9 6 3.5834 1.5849 -4.6853 10 1 2.6530 1.5958 -5.2338 11 6 4.7931 1.6449 -5.3675 12 7 5.9237 1.6311 -4.7009 13 14 4.8097 1.7438 -7.2327 14 1 3.4144 1.7424 -7.7409 15 1 5.4901 2.9940 -7.6561 16 1 5.5380 0.5729 -7.7841 17 7 4.6858 1.4886 -2.4595 18 7 4.2589 1.4154 -1.2469 19 1 -0.5401 0.9353 0.0045 20 1 -0.5400 -0.9353 -0.0045 21 1 1.8500 -0.9353 -0.0046 22 1 3.6565 0.5546 1.2408 23 1 3.4929 2.3273 1.2461 24 1 2.3253 1.3232 2.1383 25 1 0.5403 2.4051 -0.7560 26 1 1.4386 1.4311 -2.8201 27 1 6.7679 1.6733 -5.1769 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262023203.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:59 Heat of formation + Delta-G solvation = 35.761633 kcal Electronic energy + Delta-G solvation = -13551.017561 eV Core-core repulsion = 11117.619328 eV Total energy + Delta-G solvation = -2433.398233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.17543 -39.06326 -36.01512 -33.84242 -33.31935 -31.63725 -29.97707 -27.50804 -24.52007 -23.13988 -21.84976 -20.58588 -19.70801 -17.79418 -17.45082 -16.84440 -15.92345 -15.73811 -15.27805 -14.91533 -13.98544 -13.75856 -13.35184 -13.32415 -13.07169 -13.00441 -12.60574 -12.28210 -12.03517 -11.93379 -11.71718 -11.24629 -11.00813 -10.68413 -10.27021 -9.38490 -8.71821 -6.65941 1.07240 1.36672 1.40102 1.58635 1.62364 2.04913 2.11625 2.74723 2.90322 3.48533 3.90650 4.03178 4.19819 4.46963 4.49024 4.77327 4.87866 4.96725 5.02005 5.14395 5.19840 5.33476 5.69378 5.87204 5.91389 5.95242 6.57578 6.82427 7.15333 8.17909 8.29537 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.057522 B = 0.008439 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.651714 B = 3317.173736 C = 3584.064860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.184 4.184 3 C 0.253 3.747 4 C -0.114 4.114 5 O -0.559 6.559 6 C -0.089 4.089 7 C -0.118 4.118 8 N -0.162 5.162 9 C -0.342 4.342 10 H 0.148 0.852 11 C -0.002 4.002 12 N -0.810 5.810 13 Si 1.029 2.971 14 H -0.237 1.237 15 H -0.268 1.268 16 H -0.268 1.268 17 N -0.153 5.153 18 N -0.346 5.346 19 H 0.115 0.885 20 H 0.119 0.881 21 H 0.105 0.895 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.385 0.615 26 H 0.191 0.809 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.120 -1.960 0.639 10.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C 0.210 3.790 4 C -0.172 4.172 5 O -0.365 6.365 6 C -0.238 4.238 7 C -0.272 4.272 8 N 0.066 4.934 9 C -0.479 4.479 10 H 0.165 0.835 11 C -0.217 4.217 12 N -0.437 5.437 13 Si 0.846 3.154 14 H -0.160 1.160 15 H -0.193 1.193 16 H -0.192 1.192 17 N -0.129 5.129 18 N -0.205 5.205 19 H 0.133 0.867 20 H 0.137 0.863 21 H 0.123 0.877 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.235 0.765 26 H 0.208 0.792 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.952 -1.780 1.382 8.265 hybrid contribution -0.758 -0.117 -1.389 1.587 sum -8.710 -1.897 -0.008 8.914 Atomic orbital electron populations 1.23980 0.94753 1.03544 0.98094 1.23326 0.97177 0.97378 1.02475 1.18037 0.85973 0.84968 0.90044 1.21440 0.98307 1.01969 0.95449 1.86496 1.50135 1.50161 1.49748 1.21981 0.91275 1.15050 0.95464 1.22904 0.94344 1.19179 0.90726 1.47064 1.05084 1.33542 1.07695 1.21064 0.97584 1.52083 0.77127 0.83453 1.27126 0.93380 0.93173 1.08004 1.70308 0.99324 1.34022 1.40041 0.84398 0.80710 0.78622 0.71650 1.15983 1.19304 1.19237 1.82504 1.06730 1.32006 0.91688 1.73939 1.11530 1.19089 1.15983 0.86698 0.86257 0.87652 0.91630 0.93766 0.90246 0.76531 0.79178 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 13.93 67.79 0.94 -2.94 15 2 C -0.18 -5.62 8.65 25.65 0.22 -5.40 15 3 C 0.25 9.28 1.26 -12.28 -0.02 9.27 15 4 C -0.11 -4.10 8.30 71.99 0.60 -3.51 15 5 O -0.56 -18.62 11.93 -148.98 -1.78 -20.39 15 6 C -0.09 -4.19 5.77 41.55 0.24 -3.95 15 7 C -0.12 -5.51 11.01 83.18 0.92 -4.60 15 8 N -0.16 -8.98 3.78 -190.20 -0.72 -9.70 15 9 C -0.34 -17.51 10.31 83.98 0.87 -16.65 15 10 H 0.15 6.44 7.83 -2.91 -0.02 6.41 15 11 C 0.00 -0.10 5.50 84.96 0.47 0.37 15 12 N -0.81 -44.97 11.89 21.66 0.26 -44.71 15 13 Si 1.03 36.01 29.55 68.60 2.03 38.04 15 14 H -0.24 -7.36 7.11 99.48 0.71 -6.66 15 15 H -0.27 -9.22 7.11 99.48 0.71 -8.51 15 16 H -0.27 -9.16 7.11 99.48 0.71 -8.45 15 17 N -0.15 -9.38 11.73 37.02 0.43 -8.95 15 18 N -0.35 -19.51 11.61 -48.99 -0.57 -20.08 15 19 H 0.12 2.38 6.41 -2.91 -0.02 2.36 15 20 H 0.12 2.22 8.06 -2.91 -0.02 2.20 15 21 H 0.11 3.31 8.06 -2.91 -0.02 3.28 15 22 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 23 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.08 2.35 8.14 -2.38 -0.02 2.33 15 25 H 0.39 10.13 7.75 -74.06 -0.57 9.56 15 26 H 0.19 7.02 8.06 -2.91 -0.02 7.00 15 27 H 0.29 14.41 8.31 -92.71 -0.77 13.64 15 Total: -1.00 -70.44 245.42 4.50 -65.94 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.61 Total: 27.25 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 4.24 Total: -27.40 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -0.60 Total: -83.44 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.78 Total: -20.39 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -70.44 4.50 -65.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262023203.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.704 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds