Wall clock time and date at job start Sun Mar 29 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47088 * 2 1 4 4 C 1.35043 * 126.39464 * 269.99649 * 3 2 1 5 5 N 1.30504 * 108.69777 * 179.76669 * 4 3 2 6 6 C 1.34129 * 109.25337 * 0.38429 * 5 4 3 7 7 C 1.50697 * 125.98415 * 179.88431 * 6 5 4 8 8 N 1.46901 * 109.46943 * 274.68609 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00144 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99864 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 119.99815 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47527 * 89.99455 * 14 12 10 16 16 H 1.48497 * 109.47120 * 209.99666 * 14 12 10 17 17 H 1.48499 * 109.47065 * 329.99353 * 14 12 10 18 18 C 1.34668 * 108.02101 * 359.62042 * 6 5 4 19 19 H 1.09000 * 109.47225 * 299.99906 * 1 2 3 20 20 H 1.09000 * 109.46979 * 60.00004 * 1 2 3 21 21 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47365 * 239.99568 * 2 1 3 23 23 H 1.09000 * 109.46979 * 119.99996 * 2 1 3 24 24 H 1.08000 * 125.64884 * 0.02562 * 4 3 2 25 25 H 1.09004 * 109.46763 * 154.69050 * 7 6 5 26 26 H 1.08995 * 109.47483 * 34.68707 * 7 6 5 27 27 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 28 28 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 29 29 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 30 30 H 0.97004 * 119.99699 * 180.02562 * 13 12 10 31 31 H 1.08001 * 126.58902 * 180.20886 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2855 2.1367 -1.0870 5 7 2.6951 3.3105 -0.6903 6 6 2.7120 3.3432 0.6505 7 6 3.1256 4.5154 1.5024 8 7 4.5837 4.5010 1.6806 9 6 5.0241 5.6317 2.5085 10 6 6.5218 5.5840 2.6683 11 1 7.0898 4.7930 2.2012 12 6 7.1672 6.5507 3.4100 13 7 8.4742 6.5087 3.5498 14 14 6.1850 7.9191 4.2173 15 1 5.7773 7.4974 5.5816 16 1 7.0217 9.1426 4.3068 17 1 4.9749 8.2052 3.4054 18 6 2.2891 2.1470 1.1017 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.1742 1.8229 -2.1144 25 1 2.6399 4.4463 2.4758 26 1 2.8286 5.4430 1.0132 27 1 4.8913 3.6240 2.0736 28 1 4.7401 6.5672 2.0265 29 1 4.5516 5.5700 3.4888 30 1 8.9282 7.1886 4.0720 31 1 2.1841 1.8490 2.1345 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308547256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:04 Heat of formation + Delta-G solvation = 36.033425 kcal Electronic energy + Delta-G solvation = -13058.189817 eV Core-core repulsion = 10760.636464 eV Total energy + Delta-G solvation = -2297.553353 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.93140 -37.33506 -35.73933 -34.49469 -31.43616 -31.04079 -28.96527 -25.88146 -24.40988 -23.06291 -21.76574 -21.11430 -18.98964 -17.92583 -16.71881 -16.37636 -16.00997 -15.53452 -15.34017 -15.00215 -14.51914 -14.44078 -14.28740 -13.51830 -13.36173 -13.18988 -12.78625 -12.52137 -12.31857 -12.16236 -11.79795 -11.49819 -10.81385 -10.76589 -10.44703 -9.37753 -9.05104 -8.29414 -6.34285 1.15835 1.35643 1.39192 1.51112 1.98523 2.18983 2.36017 3.04402 3.67423 3.76658 3.87237 4.03821 4.16381 4.34869 4.42011 4.45719 4.69222 4.76474 4.80627 4.86832 4.98806 5.09111 5.23948 5.39075 5.53061 5.79136 5.97853 6.40273 6.59857 6.66226 6.77130 7.27352 7.30709 8.87677 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.070329 B = 0.005407 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.032531 B = 5177.532413 C = 5246.322483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.456 5.456 4 C 0.179 3.821 5 N -0.531 5.531 6 C -0.021 4.021 7 C 0.143 3.857 8 N -0.686 5.686 9 C 0.176 3.824 10 C -0.530 4.530 11 H 0.033 0.967 12 C 0.007 3.993 13 N -0.949 5.949 14 Si 0.956 3.044 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.252 1.252 18 C -0.043 4.043 19 H 0.050 0.950 20 H 0.057 0.943 21 H 0.098 0.902 22 H 0.115 0.885 23 H 0.103 0.897 24 H 0.236 0.764 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.335 0.665 28 H 0.022 0.978 29 H -0.007 1.007 30 H 0.268 0.732 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.392 -14.335 -4.971 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.139 5.139 4 C -0.104 4.104 5 N -0.250 5.250 6 C -0.149 4.149 7 C 0.014 3.986 8 N -0.317 5.317 9 C 0.047 3.953 10 C -0.568 4.568 11 H 0.051 0.949 12 C -0.190 4.190 13 N -0.589 5.589 14 Si 0.778 3.222 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.176 1.176 18 C -0.178 4.178 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.116 0.884 22 H 0.134 0.866 23 H 0.121 0.879 24 H 0.252 0.748 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.040 0.960 29 H 0.011 0.989 30 H 0.077 0.923 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.966 -13.433 -6.003 24.004 hybrid contribution -0.192 -0.178 1.633 1.654 sum -19.158 -13.611 -4.370 23.904 Atomic orbital electron populations 1.22130 0.93379 1.04204 1.02403 1.22197 0.96085 0.77860 1.06400 1.45810 1.48425 1.13823 1.05837 1.25573 1.02650 0.86970 0.95200 1.70088 1.20413 1.21970 1.12520 1.20575 1.07151 0.96386 0.90820 1.20043 0.87895 0.94874 0.95833 1.60322 1.11021 1.06066 1.54315 1.19766 0.93867 0.91129 0.90522 1.21331 0.92220 1.11885 1.31397 0.94890 1.25918 0.95928 1.00570 0.96590 1.70061 1.09902 1.36729 1.42206 0.85591 0.79102 0.78060 0.79417 1.18577 1.20511 1.17584 1.22707 1.08691 0.92377 0.94022 0.93053 0.92341 0.88354 0.86641 0.87899 0.74815 0.93134 0.92067 0.84799 0.95972 0.98931 0.92275 0.78929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.24 71.98 0.74 -0.63 16 2 C 0.10 0.97 6.87 86.38 0.59 1.56 16 3 N -0.46 -9.39 2.75 -529.06 -1.46 -10.84 16 4 C 0.18 4.42 12.56 180.26 2.26 6.69 16 5 N -0.53 -18.85 11.25 -188.32 -2.12 -20.96 16 6 C -0.02 -0.71 6.60 41.39 0.27 -0.44 16 7 C 0.14 5.45 6.22 85.56 0.53 5.98 16 8 N -0.69 -31.67 6.48 -521.98 -3.38 -35.05 16 9 C 0.18 9.02 4.51 85.55 0.39 9.41 16 10 C -0.53 -32.55 9.87 25.60 0.25 -32.30 16 11 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 12 C 0.01 0.44 5.47 84.66 0.46 0.90 16 13 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 14 Si 0.96 45.52 27.47 68.60 1.88 47.41 16 15 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 17 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 18 C -0.04 -1.12 11.49 83.09 0.95 -0.16 16 19 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 20 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 21 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 22 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.24 3.64 8.06 -2.91 -0.02 3.62 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.33 14.99 8.71 -89.69 -0.78 14.21 16 28 H 0.02 1.16 7.20 -2.39 -0.02 1.14 16 29 H -0.01 -0.33 7.57 -2.39 -0.02 -0.35 16 30 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 31 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -78.28 269.45 1.95 -76.32 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.27 Total: 13.00 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 6.46 Total: -8.99 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -6.66 Total: -127.73 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -78.28 1.95 -76.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308547256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.356 kcal (2) G-P(sol) polarization free energy of solvation -78.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds