Wall clock time and date at job start Sun Mar 29 2020 21:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99961 * 2 1 4 4 C 1.50693 * 109.46964 * 269.72248 * 3 2 1 5 5 H 1.08007 * 120.00333 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00130 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99986 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99667 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.46750 * 89.99697 * 8 6 4 10 10 H 1.48500 * 109.47084 * 209.99435 * 8 6 4 11 11 H 1.48494 * 109.47226 * 329.99971 * 8 6 4 12 12 C 1.34778 * 120.00047 * 179.72146 * 2 1 3 13 13 O 1.21601 * 119.99817 * 176.33616 * 12 2 1 14 14 C 1.47415 * 119.99659 * 356.33569 * 12 2 1 15 15 N 1.31608 * 125.86864 * 5.61808 * 14 12 2 16 16 C 1.33094 * 109.09621 * 179.83395 * 15 14 12 17 17 C 1.35566 * 108.35188 * 0.42760 * 16 15 14 18 18 N 1.35407 * 107.15757 * 359.74510 * 17 16 15 19 19 H 0.96996 * 126.43825 * 179.97438 * 18 17 16 20 20 H 1.09002 * 109.46692 * 95.71603 * 1 2 3 21 21 H 1.09002 * 109.47402 * 215.71099 * 1 2 3 22 22 H 1.09002 * 109.47225 * 335.71453 * 1 2 3 23 23 H 1.09001 * 109.46858 * 29.72441 * 3 2 1 24 24 H 1.08996 * 109.47302 * 149.72251 * 3 2 1 25 25 H 0.97007 * 119.99792 * 180.02562 * 7 6 4 26 26 H 1.07998 * 125.82642 * 180.20522 * 16 15 14 27 27 H 1.07997 * 126.42166 * 179.77544 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4546 1.7003 -1.4207 5 1 2.1068 1.0907 -2.2417 6 6 3.1330 2.8739 -1.6728 7 7 3.3578 3.2502 -2.9127 8 14 3.7340 3.9286 -0.2529 9 1 5.1059 3.5084 0.1297 10 1 3.7506 5.3544 -0.6678 11 1 2.8233 3.7614 0.9080 12 6 2.1389 -1.1672 0.0057 13 8 3.3531 -1.1685 -0.0616 14 6 1.4040 -2.4421 0.0935 15 7 0.0956 -2.5814 0.0665 16 6 -0.2068 -3.8738 0.1650 17 6 0.9484 -4.5759 0.2670 18 7 1.9645 -3.6819 0.2227 19 1 2.9119 -3.8835 0.2735 20 1 -0.3633 -0.1024 -1.0226 21 1 -0.3634 -0.8344 0.5998 22 1 -0.3634 0.9367 0.4227 23 1 1.6063 2.0296 0.5096 24 1 3.1477 1.1397 0.5181 25 1 3.8354 4.0758 -3.0899 26 1 -1.2027 -4.2916 0.1673 27 1 1.0410 -5.6474 0.3647 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328730412.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:51 Heat of formation + Delta-G solvation = 13.972301 kcal Electronic energy + Delta-G solvation = -13472.992362 eV Core-core repulsion = 11038.649272 eV Total energy + Delta-G solvation = -2434.343090 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.19045 -40.33144 -36.83848 -34.77973 -33.62653 -31.44125 -29.79832 -27.50299 -25.39923 -23.18025 -22.41477 -20.99825 -19.17364 -18.94243 -17.50166 -16.99439 -16.79328 -16.06398 -15.28888 -14.99126 -14.83235 -14.55401 -14.32699 -13.84605 -13.70523 -13.30074 -12.87413 -12.45785 -12.04219 -11.76559 -11.30668 -11.28761 -10.85620 -10.78011 -9.67585 -9.35646 -8.34450 -6.41034 0.40038 1.34286 1.38607 1.47783 1.66349 1.74036 2.31780 2.38809 2.62029 2.99278 3.31336 4.01104 4.38917 4.50202 4.51399 4.68367 4.82070 4.86679 5.01491 5.17948 5.41286 5.52422 5.76126 6.18806 6.21723 6.47270 6.59569 6.83327 7.12310 7.25900 8.82983 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.060456 B = 0.008084 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.037690 B = 3462.713413 C = 3563.156581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.581 5.581 3 C 0.224 3.776 4 C -0.541 4.541 5 H 0.022 0.978 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.235 1.235 12 C 0.580 3.420 13 O -0.589 6.589 14 C 0.113 3.887 15 N -0.453 5.453 16 C -0.053 4.053 17 C 0.004 3.996 18 N -0.520 5.520 19 H 0.436 0.564 20 H 0.040 0.960 21 H 0.118 0.882 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.027 0.973 25 H 0.270 0.730 26 H 0.210 0.790 27 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -14.499 10.488 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.309 5.309 3 C 0.102 3.898 4 C -0.579 4.579 5 H 0.041 0.959 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.158 1.158 12 C 0.367 3.633 13 O -0.470 6.470 14 C -0.146 4.146 15 N -0.177 5.177 16 C -0.206 4.206 17 C -0.135 4.135 18 N -0.122 5.122 19 H 0.277 0.723 20 H 0.059 0.941 21 H 0.135 0.865 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.227 0.773 27 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.082 -13.613 10.272 18.466 hybrid contribution 1.464 -0.041 -0.222 1.481 sum -5.619 -13.654 10.050 17.861 Atomic orbital electron populations 1.22311 0.76869 1.04570 1.02425 1.47639 1.08968 1.05275 1.69063 1.19541 0.92942 0.81542 0.95771 1.21499 1.37252 1.07064 0.92130 0.95930 1.25913 0.95033 0.98807 0.98974 1.70060 1.42435 1.24591 1.21503 0.85635 0.79700 0.77591 0.79548 1.19772 1.19866 1.15807 1.17072 0.85789 0.82895 0.77518 1.90749 1.14750 1.87562 1.53937 1.22185 0.89625 0.87195 1.15556 1.70281 1.09743 1.21587 1.16092 1.23311 1.01004 0.88100 1.08163 1.23850 0.86427 0.98368 1.04888 1.43078 1.11816 1.05842 1.51467 0.72311 0.94136 0.86451 0.90536 0.92244 0.95446 0.92122 0.77289 0.74588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.94 9.69 127.77 1.24 4.17 15 2 N -0.58 -26.49 2.86 -855.06 -2.44 -28.93 15 3 C 0.22 11.40 4.24 85.63 0.36 11.77 15 4 C -0.54 -33.22 9.94 25.60 0.25 -32.97 15 5 H 0.02 1.57 8.06 -2.91 -0.02 1.54 15 6 C 0.01 0.64 5.47 84.66 0.46 1.11 15 7 N -0.95 -61.11 13.96 21.45 0.30 -60.81 15 8 Si 0.95 44.77 27.47 68.60 1.88 46.65 15 9 H -0.27 -12.69 7.11 99.48 0.71 -11.99 15 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 11 H -0.24 -9.83 6.54 99.48 0.65 -9.18 15 12 C 0.58 26.24 7.66 86.66 0.66 26.90 15 13 O -0.59 -30.49 16.71 -4.03 -0.07 -30.56 15 14 C 0.11 3.93 7.68 136.28 1.05 4.97 15 15 N -0.45 -13.89 7.66 -189.53 -1.45 -15.34 15 16 C -0.05 -1.10 11.85 83.88 0.99 -0.10 15 17 C 0.00 0.07 12.00 83.52 1.00 1.08 15 18 N -0.52 -12.82 6.15 -188.01 -1.16 -13.97 15 19 H 0.44 9.26 8.96 -92.71 -0.83 8.43 15 20 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 21 H 0.12 3.83 5.25 -2.39 -0.01 3.82 15 22 H 0.08 2.49 7.83 -2.39 -0.02 2.47 15 23 H 0.06 2.74 6.91 -2.39 -0.02 2.72 15 24 H 0.03 1.45 6.91 -2.39 -0.02 1.43 15 25 H 0.27 16.07 8.31 -92.70 -0.77 15.30 15 26 H 0.21 2.64 8.06 -2.91 -0.02 2.62 15 27 H 0.24 1.12 8.06 -2.91 -0.02 1.10 15 Total: -1.00 -81.20 240.57 3.40 -77.80 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.31 Total: 8.22 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 6.03 Total: 16.93 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -4.75 Total: -119.05 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.07 Total: -30.56 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -81.20 3.40 -77.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328730412.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.776 kcal (2) G-P(sol) polarization free energy of solvation -81.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds