Wall clock time and date at job start Sun Mar 29 2020 21:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46891 * 109.47465 * 18.39964 * 3 2 1 5 5 C 1.46897 * 111.00363 * 163.15098 * 4 3 2 6 6 C 1.52999 * 109.47712 * 190.00314 * 5 4 3 7 7 H 1.09008 * 109.46680 * 59.99642 * 6 5 4 8 8 O 1.42898 * 109.47100 * 300.00245 * 6 5 4 9 9 C 1.50696 * 109.47234 * 179.97438 * 6 5 4 10 10 H 1.07991 * 120.00409 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99638 * 180.02562 * 9 6 5 12 12 N 1.31515 * 120.00472 * 359.71596 * 11 9 6 13 13 Si 1.86804 * 119.99790 * 180.02562 * 11 9 6 14 14 H 1.48502 * 109.47382 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47443 * 119.99408 * 13 11 9 16 16 H 1.48504 * 109.46669 * 239.99661 * 13 11 9 17 17 C 1.46896 * 111.00585 * 287.10762 * 4 3 2 18 18 C 1.53002 * 117.50238 * 132.32675 * 17 4 3 19 19 C 1.52994 * 60.00108 * 252.51413 * 18 17 4 20 20 H 4.40885 * 5.52096 * 179.97438 * 4 1 2 21 21 H 1.09010 * 109.46877 * 258.40110 * 3 2 1 22 22 H 1.08994 * 109.47120 * 138.40456 * 3 2 1 23 23 H 1.09001 * 109.47219 * 69.99687 * 5 4 3 24 24 H 1.09007 * 109.46920 * 310.00423 * 5 4 3 25 25 H 0.96699 * 114.00106 * 299.99913 * 8 6 5 26 26 H 0.96993 * 120.00511 * 179.97438 * 12 11 9 27 27 H 1.08995 * 115.55049 * 278.04202 * 17 4 3 28 28 H 1.08998 * 117.49639 * 0.02562 * 18 17 4 29 29 H 1.09003 * 117.49578 * 145.02216 * 18 17 4 30 30 H 1.09004 * 117.50286 * 252.50911 * 19 18 17 31 31 H 1.09001 * 117.49828 * 107.48963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1364 -1.3132 -0.4371 5 6 4.5493 -1.2429 -0.8329 6 6 4.9548 -2.5529 -1.5114 7 1 4.3371 -2.7104 -2.3956 8 8 4.7686 -3.6384 -0.6009 9 6 6.4041 -2.4804 -1.9178 10 1 6.9784 -1.5891 -1.7132 11 6 6.9965 -3.5518 -2.5520 12 7 6.2984 -4.6391 -2.7972 13 14 8.7932 -3.4623 -3.0553 14 1 9.3520 -2.1435 -2.6634 15 1 9.5520 -4.5432 -2.3763 16 1 8.9039 -3.6289 -4.5268 17 6 2.9320 -2.3257 0.6074 18 6 2.3053 -3.6569 0.1880 19 6 1.4905 -2.6511 1.0035 20 1 -1.0498 -0.0004 0.0001 21 1 3.0093 0.2075 1.0068 22 1 3.0090 0.7693 -0.6822 23 1 5.1669 -1.0853 0.0514 24 1 4.6913 -0.4149 -1.5274 25 1 5.2888 -3.5646 0.2109 26 1 6.7150 -5.3926 -3.2437 27 1 3.6874 -2.3499 1.3928 28 1 2.0450 -3.7817 -0.8631 29 1 2.6486 -4.5574 0.6974 30 1 1.2975 -2.8897 2.0494 31 1 0.6937 -2.1139 0.4889 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335800472.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:39 Heat of formation + Delta-G solvation = 43.535995 kcal Electronic energy + Delta-G solvation = -13896.320222 eV Core-core repulsion = 11566.799454 eV Total energy + Delta-G solvation = -2329.520768 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.39227 -35.31198 -33.96824 -32.35771 -32.02325 -28.49123 -25.95859 -23.83133 -21.61793 -21.06078 -19.85716 -17.88596 -16.88375 -15.50817 -14.97792 -14.57263 -14.30911 -14.24036 -13.60859 -13.37154 -12.74350 -12.41409 -11.91857 -11.14354 -11.11438 -10.86615 -10.82349 -10.70547 -10.23843 -10.05675 -9.92524 -9.57262 -9.36336 -8.96116 -8.54649 -8.09408 -7.60861 -5.97760 -4.15937 2.97013 3.09351 3.27643 3.36102 3.38952 4.34842 4.46945 4.55668 4.70115 5.29012 5.54972 5.60308 5.60751 5.69399 5.92403 6.06530 6.15688 6.18641 6.29213 6.38228 6.50643 6.74713 6.85590 6.92576 7.54796 7.64288 7.79401 7.86556 7.98046 8.23771 8.87696 9.45065 9.62522 11.06040 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053701 B = 0.008134 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.281381 B = 3441.564406 C = 3764.156950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.149 4.149 3 C 0.155 3.845 4 N -0.506 5.506 5 C 0.035 3.965 6 C 0.239 3.761 7 H 0.061 0.939 8 O -0.550 6.550 9 C -0.573 4.573 10 H 0.054 0.946 11 C 0.081 3.919 12 N -0.856 5.856 13 Si 0.887 3.113 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.031 3.969 18 C -0.111 4.111 19 C -0.210 4.210 20 H 0.213 0.787 21 H 0.053 0.947 22 H 0.092 0.908 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.335 0.665 26 H 0.259 0.741 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 6.077 6.545 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.149 4.149 3 C 0.029 3.971 4 N -0.231 5.231 5 C -0.092 4.092 6 C 0.181 3.819 7 H 0.079 0.921 8 O -0.351 6.351 9 C -0.611 4.611 10 H 0.072 0.928 11 C -0.126 4.126 12 N -0.492 5.492 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.078 4.078 18 C -0.149 4.149 19 C -0.248 4.248 20 H 0.230 0.770 21 H 0.070 0.930 22 H 0.110 0.890 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.178 0.822 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.613 5.554 5.566 10.945 hybrid contribution 1.785 0.553 0.742 2.011 sum -5.828 6.107 6.308 10.538 Atomic orbital electron populations 1.24677 0.95732 1.01631 1.02591 1.23012 0.94301 0.98724 0.98889 1.19042 0.85077 0.93331 0.99689 1.61803 1.20856 1.03163 1.37246 1.23124 0.84089 1.03275 0.98729 1.19293 0.94323 0.80051 0.88280 0.92148 1.86675 1.68120 1.49023 1.31302 1.21674 0.96861 1.01478 1.41116 0.92797 1.25007 0.97615 0.95286 0.94650 1.70092 1.35754 1.04079 1.39288 0.86651 0.85542 0.78024 0.78326 1.19809 1.20967 1.20919 1.22065 0.94185 0.96351 0.95189 1.22611 1.00051 0.92081 1.00158 1.23492 0.95255 1.05983 1.00047 0.77013 0.92953 0.89002 0.95747 0.91255 0.82206 0.93126 0.90512 0.88771 0.89456 0.90199 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.04 17.77 29.55 0.53 -2.52 16 2 C -0.15 -2.27 11.22 -37.12 -0.42 -2.69 16 3 C 0.16 2.42 5.47 -6.61 -0.04 2.38 16 4 N -0.51 -9.41 4.59 -230.14 -1.06 -10.47 16 5 C 0.03 0.71 4.74 -3.83 -0.02 0.69 16 6 C 0.24 5.94 3.06 -27.89 -0.09 5.85 16 7 H 0.06 1.72 8.14 -51.92 -0.42 1.30 16 8 O -0.55 -13.40 8.65 -35.23 -0.30 -13.71 16 9 C -0.57 -15.51 8.76 -34.44 -0.30 -15.82 16 10 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 11 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 12 N -0.86 -25.17 12.83 55.43 0.71 -24.46 16 13 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 C 0.03 0.55 3.41 -67.71 -0.23 0.32 16 18 C -0.11 -2.03 8.32 -26.73 -0.22 -2.25 16 19 C -0.21 -3.36 9.38 -26.73 -0.25 -3.61 16 20 H 0.21 2.03 7.80 -54.10 -0.42 1.61 16 21 H 0.05 0.75 8.04 -51.92 -0.42 0.34 16 22 H 0.09 1.32 7.79 -51.93 -0.40 0.91 16 23 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 24 H 0.07 1.37 7.85 -51.92 -0.41 0.96 16 25 H 0.34 7.52 8.81 45.56 0.40 7.92 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.08 1.35 7.97 -51.93 -0.41 0.93 16 28 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.62 4.91 -51.93 -0.26 1.37 16 LS Contribution 264.37 15.07 3.98 3.98 Total: -1.00 -29.66 264.37 -6.39 -36.05 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.57 Total: 8.06 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.13 Total: -15.50 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.35 Total: -34.93 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.30 Total: -13.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.66 -6.39 -36.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335800472.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.584 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds