Wall clock time and date at job start Sun Mar 29 2020 21:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46891 * 109.47465 * 18.39964 * 3 2 1 5 5 C 1.46897 * 111.00363 * 163.15098 * 4 3 2 6 6 C 1.52999 * 109.47712 * 190.00314 * 5 4 3 7 7 H 1.09008 * 109.46680 * 59.99642 * 6 5 4 8 8 O 1.42898 * 109.47100 * 300.00245 * 6 5 4 9 9 C 1.50696 * 109.47234 * 179.97438 * 6 5 4 10 10 H 1.07991 * 120.00409 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99638 * 180.02562 * 9 6 5 12 12 N 1.31515 * 120.00472 * 359.71596 * 11 9 6 13 13 Si 1.86804 * 119.99790 * 180.02562 * 11 9 6 14 14 H 1.48502 * 109.47382 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47443 * 119.99408 * 13 11 9 16 16 H 1.48504 * 109.46669 * 239.99661 * 13 11 9 17 17 C 1.46896 * 111.00585 * 287.10762 * 4 3 2 18 18 C 1.53002 * 117.50238 * 132.32675 * 17 4 3 19 19 C 1.52994 * 60.00108 * 252.51413 * 18 17 4 20 20 H 4.40885 * 5.52096 * 179.97438 * 4 1 2 21 21 H 1.09010 * 109.46877 * 258.40110 * 3 2 1 22 22 H 1.08994 * 109.47120 * 138.40456 * 3 2 1 23 23 H 1.09001 * 109.47219 * 69.99687 * 5 4 3 24 24 H 1.09007 * 109.46920 * 310.00423 * 5 4 3 25 25 H 0.96699 * 114.00106 * 299.99913 * 8 6 5 26 26 H 0.96993 * 120.00511 * 179.97438 * 12 11 9 27 27 H 1.08995 * 115.55049 * 278.04202 * 17 4 3 28 28 H 1.08998 * 117.49639 * 0.02562 * 18 17 4 29 29 H 1.09003 * 117.49578 * 145.02216 * 18 17 4 30 30 H 1.09004 * 117.50286 * 252.50911 * 19 18 17 31 31 H 1.09001 * 117.49828 * 107.48963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1364 -1.3132 -0.4371 5 6 4.5493 -1.2429 -0.8329 6 6 4.9548 -2.5529 -1.5114 7 1 4.3371 -2.7104 -2.3956 8 8 4.7686 -3.6384 -0.6009 9 6 6.4041 -2.4804 -1.9178 10 1 6.9784 -1.5891 -1.7132 11 6 6.9965 -3.5518 -2.5520 12 7 6.2984 -4.6391 -2.7972 13 14 8.7932 -3.4623 -3.0553 14 1 9.3520 -2.1435 -2.6634 15 1 9.5520 -4.5432 -2.3763 16 1 8.9039 -3.6289 -4.5268 17 6 2.9320 -2.3257 0.6074 18 6 2.3053 -3.6569 0.1880 19 6 1.4905 -2.6511 1.0035 20 1 -1.0498 -0.0004 0.0001 21 1 3.0093 0.2075 1.0068 22 1 3.0090 0.7693 -0.6822 23 1 5.1669 -1.0853 0.0514 24 1 4.6913 -0.4149 -1.5274 25 1 5.2888 -3.5646 0.2109 26 1 6.7150 -5.3926 -3.2437 27 1 3.6874 -2.3499 1.3928 28 1 2.0450 -3.7817 -0.8631 29 1 2.6486 -4.5574 0.6974 30 1 1.2975 -2.8897 2.0494 31 1 0.6937 -2.1139 0.4889 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335800472.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:39 Heat of formation + Delta-G solvation = 22.651532 kcal Electronic energy + Delta-G solvation = -13897.225840 eV Core-core repulsion = 11566.799454 eV Total energy + Delta-G solvation = -2330.426387 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.86494 -37.14668 -35.30380 -34.19125 -33.59030 -30.23608 -27.57570 -25.51492 -23.05102 -22.76852 -21.39233 -19.04644 -18.86358 -16.93662 -16.59829 -16.45285 -15.99347 -15.78159 -15.16568 -14.92920 -14.23883 -14.00963 -13.36199 -13.07284 -12.93495 -12.68349 -12.52871 -12.30764 -12.02572 -11.36779 -11.20633 -11.02281 -10.88895 -10.67684 -10.66887 -9.89296 -9.11681 -8.09233 -6.34805 1.40787 1.42419 1.53909 1.83531 2.00947 2.41204 3.06124 3.16918 3.22395 3.62317 4.12985 4.22611 4.33353 4.41556 4.44833 4.56626 4.66015 4.73153 4.86896 4.97065 5.10356 5.17452 5.31034 5.47018 5.66509 5.81962 6.05641 6.20817 6.34838 6.78248 6.79475 7.38507 7.64403 8.94730 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053701 B = 0.008134 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.281381 B = 3441.564406 C = 3764.156950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.197 4.197 3 C 0.157 3.843 4 N -0.523 5.523 5 C 0.052 3.948 6 C 0.242 3.758 7 H 0.014 0.986 8 O -0.555 6.555 9 C -0.585 4.585 10 H 0.059 0.941 11 C 0.027 3.973 12 N -0.898 5.898 13 Si 0.958 3.042 14 H -0.263 1.263 15 H -0.280 1.280 16 H -0.282 1.282 17 C 0.022 3.978 18 C -0.129 4.129 19 C -0.178 4.178 20 H 0.247 0.753 21 H 0.066 0.934 22 H 0.099 0.901 23 H 0.034 0.966 24 H 0.073 0.927 25 H 0.344 0.656 26 H 0.259 0.741 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.165 7.270 7.643 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.198 4.198 3 C 0.031 3.969 4 N -0.247 5.247 5 C -0.076 4.076 6 C 0.184 3.816 7 H 0.032 0.968 8 O -0.358 6.358 9 C -0.623 4.623 10 H 0.077 0.923 11 C -0.176 4.176 12 N -0.535 5.535 13 Si 0.783 3.217 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.208 1.208 17 C -0.086 4.086 18 C -0.167 4.167 19 C -0.215 4.215 20 H 0.264 0.736 21 H 0.084 0.916 22 H 0.117 0.883 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.187 0.813 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.824 6.770 6.676 12.313 hybrid contribution 1.738 0.190 0.405 1.795 sum -6.086 6.959 7.081 11.645 Atomic orbital electron populations 1.25540 0.96550 0.99211 1.00465 1.23161 0.94766 1.00904 1.00920 1.19032 0.85781 0.91571 1.00518 1.61655 1.19446 1.05186 1.38440 1.22718 0.85704 1.00431 0.98726 1.19033 0.92698 0.82295 0.87601 0.96796 1.86639 1.68237 1.49285 1.31620 1.22075 0.97984 1.01518 1.40731 0.92278 1.25858 1.02104 0.94918 0.94673 1.70235 1.37783 1.04939 1.40541 0.85539 0.80040 0.78346 0.77767 1.18710 1.20625 1.20759 1.22126 0.95724 0.95651 0.95104 1.22461 1.02461 0.92963 0.98823 1.23488 0.93944 1.03219 1.00860 0.73631 0.91647 0.88285 0.94811 0.90908 0.81251 0.93179 0.90041 0.91996 0.89369 0.87614 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.72 17.77 74.32 1.32 -3.40 16 2 C -0.20 -5.61 11.22 31.13 0.35 -5.26 16 3 C 0.16 4.65 5.47 84.50 0.46 5.12 16 4 N -0.52 -19.17 4.59 -882.04 -4.05 -23.22 16 5 C 0.05 2.09 4.74 86.30 0.41 2.50 16 6 C 0.24 12.32 3.06 29.85 0.09 12.41 16 7 H 0.01 0.84 8.14 -2.38 -0.02 0.82 16 8 O -0.56 -27.68 8.65 -148.98 -1.29 -28.97 16 9 C -0.58 -31.85 8.76 25.60 0.22 -31.63 16 10 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 11 C 0.03 1.50 5.40 84.66 0.46 1.95 16 12 N -0.90 -53.86 12.83 21.45 0.28 -53.59 16 13 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 C 0.02 0.78 3.41 44.92 0.15 0.93 16 18 C -0.13 -4.74 8.32 30.59 0.25 -4.49 16 19 C -0.18 -5.34 9.38 30.59 0.29 -5.05 16 20 H 0.25 3.66 7.80 -4.43 -0.03 3.62 16 21 H 0.07 1.75 8.04 -2.38 -0.02 1.73 16 22 H 0.10 2.71 7.79 -2.39 -0.02 2.69 16 23 H 0.03 1.30 8.10 -2.39 -0.02 1.28 16 24 H 0.07 2.85 7.85 -2.38 -0.02 2.83 16 25 H 0.34 15.55 8.81 -74.06 -0.65 14.90 16 26 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 27 H 0.08 2.75 7.97 -2.39 -0.02 2.73 16 28 H 0.06 2.65 8.14 -2.39 -0.02 2.64 16 29 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.10 3.04 4.91 -2.39 -0.01 3.03 16 Total: -1.00 -63.96 264.37 1.43 -62.53 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.46 Total: 24.79 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.01 Total: -26.90 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -3.77 Total: -76.80 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.29 Total: -28.97 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -63.96 1.43 -62.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335800472.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.181 kcal (2) G-P(sol) polarization free energy of solvation -63.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds