Wall clock time and date at job start Sun Mar 29 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 119.99576 * 2 1 4 4 H 1.08006 * 119.99804 * 202.09150 * 3 2 1 5 5 C 1.38797 * 120.00153 * 22.09733 * 3 2 1 6 6 N 1.31562 * 119.99704 * 16.50965 * 5 3 2 7 7 Si 1.86802 * 120.00056 * 196.50994 * 5 3 2 8 8 H 1.48500 * 109.46942 * 94.97669 * 7 5 3 9 9 H 1.48503 * 109.46914 * 214.98056 * 7 5 3 10 10 H 1.48500 * 109.46923 * 334.97603 * 7 5 3 11 11 C 1.38225 * 120.00158 * 180.02562 * 2 1 3 12 12 N 1.31572 * 126.45605 * 174.76728 * 11 2 1 13 13 N 1.28418 * 110.49179 * 180.29522 * 12 11 2 14 14 N 1.28894 * 110.35782 * 359.74444 * 13 12 11 15 15 N 1.35437 * 126.45807 * 354.63446 * 11 2 1 16 16 C 1.46498 * 127.38781 * 359.97438 * 15 11 2 17 17 C 1.52995 * 117.50146 * 110.32473 * 16 15 11 18 18 C 1.52995 * 60.03415 * 107.47842 * 17 16 15 19 19 H 1.09004 * 109.46844 * 265.93739 * 1 2 3 20 20 H 1.08995 * 109.47427 * 25.93801 * 1 2 3 21 21 H 1.09000 * 109.47084 * 145.94684 * 1 2 3 22 22 H 0.97004 * 119.99848 * 179.97438 * 6 5 3 23 23 H 1.09002 * 115.55591 * 324.63467 * 16 15 11 24 24 H 1.09003 * 117.50066 * 214.98357 * 17 16 15 25 25 H 1.09005 * 117.49525 * 359.97263 * 17 16 15 26 26 H 1.09002 * 117.50070 * 107.50028 * 18 17 16 27 27 H 1.09001 * 117.49727 * 252.52415 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1702 1.2203 -0.3518 5 6 1.5320 2.3438 0.4522 6 7 0.4335 2.2653 1.1719 7 14 2.2605 4.0135 0.0387 8 1 1.5974 4.5562 -1.1741 9 1 2.0468 4.9424 1.1775 10 1 3.7164 3.8690 -0.2157 11 6 2.1561 -1.1970 -0.0005 12 7 3.4597 -1.3471 -0.0971 13 7 3.7720 -2.5925 -0.0716 14 7 2.7131 -3.3179 0.0463 15 7 1.6193 -2.4364 0.1008 16 6 0.2023 -2.7839 0.2327 17 6 -0.4713 -3.4677 -0.9587 18 6 -0.1570 -4.2701 0.3054 19 1 -0.3633 -0.0728 1.0251 20 1 -0.3634 0.9241 -0.4495 21 1 -0.3633 -0.8514 -0.5755 22 1 0.0021 3.0744 1.4883 23 1 -0.3989 -2.0911 0.8214 24 1 -1.5158 -3.2246 -1.1539 25 1 0.1398 -3.6585 -1.8410 26 1 -0.9947 -4.5551 0.9420 27 1 0.6611 -4.9886 0.2550 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340252921.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:18 Heat of formation + Delta-G solvation = 149.820742 kcal Electronic energy + Delta-G solvation = -13828.947015 eV Core-core repulsion = 11432.787507 eV Total energy + Delta-G solvation = -2396.159508 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.31532 -38.83413 -38.03736 -34.29455 -33.21642 -31.65032 -28.78201 -26.58550 -24.79556 -23.53251 -22.57473 -22.10717 -19.35597 -18.33859 -17.62780 -17.24212 -16.21425 -15.89792 -15.54281 -14.89253 -14.43981 -14.00994 -13.40401 -13.33217 -12.97598 -12.74214 -12.66930 -12.52140 -12.33279 -12.08802 -11.87893 -11.54984 -11.22450 -10.82241 -10.61646 -9.28666 -8.44563 -5.96977 0.49548 1.10172 1.43848 1.47841 1.60174 1.85017 2.23563 2.65167 2.69208 2.95556 3.48597 3.73101 3.92744 4.17051 4.28758 4.63937 4.66906 4.77362 4.80344 4.89394 5.04374 5.11550 5.17120 5.39310 5.51403 6.02945 6.51454 7.09679 7.29937 8.08429 8.58417 Molecular weight = 209.10amu Principal moments of inertia in cm(-1) A = 0.043697 B = 0.010514 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.628117 B = 2662.372855 C = 3166.844546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.412 5.412 3 C -0.327 4.327 4 H 0.089 0.911 5 C 0.002 3.998 6 N -0.891 5.891 7 Si 0.999 3.001 8 H -0.264 1.264 9 H -0.276 1.276 10 H -0.271 1.271 11 C 0.449 3.551 12 N -0.430 5.430 13 N -0.054 5.054 14 N -0.148 5.148 15 N -0.413 5.413 16 C 0.040 3.960 17 C -0.165 4.165 18 C -0.142 4.142 19 H 0.050 0.950 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.278 0.722 23 H 0.153 0.847 24 H 0.143 0.857 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 -4.523 -2.059 9.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.117 5.117 3 C -0.456 4.456 4 H 0.107 0.893 5 C -0.202 4.202 6 N -0.528 5.528 7 Si 0.822 3.178 8 H -0.189 1.189 9 H -0.201 1.201 10 H -0.196 1.196 11 C 0.090 3.910 12 N -0.301 5.301 13 N -0.049 5.049 14 N -0.138 5.138 15 N -0.220 5.220 16 C -0.063 4.063 17 C -0.204 4.204 18 C -0.180 4.180 19 H 0.068 0.932 20 H 0.094 0.906 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.170 0.830 24 H 0.161 0.839 25 H 0.102 0.898 26 H 0.161 0.839 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.271 -4.951 -2.008 9.023 hybrid contribution -0.397 1.152 0.118 1.225 sum -7.668 -3.798 -1.890 8.764 Atomic orbital electron populations 1.21853 0.76961 1.02022 1.00984 1.41975 1.05412 0.98764 1.65580 1.19834 1.00114 0.83093 1.42577 0.89306 1.26133 0.97153 1.02909 0.94034 1.70131 1.20125 1.31106 1.31403 0.84815 0.78651 0.76120 0.78230 1.18919 1.20099 1.19577 1.21985 0.88528 0.83538 0.96989 1.74609 1.09522 1.09872 1.36122 1.77479 1.20812 0.97563 1.09093 1.81930 0.88281 1.13766 1.29811 1.50322 1.07795 1.02429 1.61466 1.22416 0.76371 1.00338 1.07187 1.23596 1.02786 1.01863 0.92117 1.23402 1.03916 0.90214 1.00420 0.93165 0.90648 0.91332 0.91203 0.83035 0.83862 0.89848 0.83865 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.07 7.37 127.77 0.94 6.01 15 2 N -0.41 -20.38 3.10 -546.18 -1.69 -22.07 15 3 C -0.33 -17.28 9.45 84.03 0.79 -16.48 15 4 H 0.09 4.95 7.63 -2.91 -0.02 4.93 15 5 C 0.00 0.08 4.96 84.87 0.42 0.50 15 6 N -0.89 -43.68 10.92 21.64 0.24 -43.44 15 7 Si 1.00 39.49 29.58 68.60 2.03 41.52 15 8 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 9 H -0.28 -10.57 7.11 99.48 0.71 -9.86 15 10 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 11 C 0.45 22.44 8.37 260.63 2.18 24.62 15 12 N -0.43 -23.15 11.64 -58.66 -0.68 -23.83 15 13 N -0.05 -2.71 13.38 37.02 0.50 -2.22 15 14 N -0.15 -6.78 13.41 37.02 0.50 -6.28 15 15 N -0.41 -17.71 4.02 -328.88 -1.32 -19.04 15 16 C 0.04 1.25 4.73 45.01 0.21 1.46 15 17 C -0.16 -3.82 10.16 30.59 0.31 -3.51 15 18 C -0.14 -3.26 10.22 30.62 0.31 -2.95 15 19 H 0.05 2.07 7.35 -2.39 -0.02 2.06 15 20 H 0.07 3.22 6.75 -2.39 -0.02 3.21 15 21 H 0.07 2.31 5.40 -2.39 -0.01 2.30 15 22 H 0.28 12.73 8.31 -92.70 -0.77 11.95 15 23 H 0.15 4.38 5.95 -2.39 -0.01 4.36 15 24 H 0.14 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.08 2.24 8.14 -2.38 -0.02 2.22 15 26 H 0.14 2.23 8.14 -2.39 -0.02 2.21 15 27 H 0.10 2.52 7.88 -2.39 -0.02 2.50 15 Total: -1.00 -62.94 236.33 5.92 -57.01 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.19 Total: 8.71 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 5.17 Total: 9.64 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -2.47 Total: -116.88 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -62.94 5.92 -57.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340252921.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.834 kcal (2) G-P(sol) polarization free energy of solvation -62.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds