Wall clock time and date at job start Sun Mar 29 2020 21:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33121 * 1 3 3 C 1.50708 * 119.99478 * 2 1 4 4 C 1.52996 * 109.46794 * 88.60000 * 3 2 1 5 5 C 1.46951 * 120.00303 * 180.02562 * 2 1 3 6 6 O 1.21656 * 120.00000 * 5.29645 * 5 2 1 7 7 N 1.34781 * 119.99577 * 185.29951 * 5 2 1 8 8 C 1.36818 * 120.00332 * 5.72401 * 7 5 2 9 9 H 1.08002 * 119.99825 * 53.80247 * 8 7 5 10 10 C 1.39072 * 119.99745 * 233.80149 * 8 7 5 11 11 N 1.31349 * 120.00270 * 21.21294 * 10 8 7 12 12 Si 1.86806 * 119.99753 * 201.20576 * 10 8 7 13 13 H 1.48497 * 109.46839 * 180.02562 * 12 10 8 14 14 H 1.48504 * 109.46978 * 300.00549 * 12 10 8 15 15 H 1.48507 * 109.46842 * 60.00266 * 12 10 8 16 16 C 1.46498 * 119.99705 * 185.72866 * 7 5 2 17 17 C 1.53012 * 117.49745 * 315.25390 * 16 7 5 18 18 C 1.53005 * 117.49787 * 246.60073 * 16 7 5 19 19 H 1.07995 * 120.00704 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.99547 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46680 * 208.59824 * 3 2 1 22 22 H 1.09003 * 109.46981 * 328.59930 * 3 2 1 23 23 H 1.08998 * 109.47397 * 281.17145 * 4 3 2 24 24 H 1.09000 * 109.47271 * 41.17768 * 4 3 2 25 25 H 1.09004 * 109.46689 * 161.16988 * 4 3 2 26 26 H 0.96999 * 119.99711 * 3.03122 * 11 10 8 27 27 H 1.08999 * 115.55713 * 100.92394 * 16 7 5 28 28 H 1.09001 * 117.49651 * 0.02562 * 17 16 7 29 29 H 1.09000 * 117.49373 * 145.01923 * 17 16 7 30 30 H 1.08999 * 117.49361 * 214.97791 * 18 16 7 31 31 H 1.09001 * 117.49939 * 359.97026 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3312 0.0000 0.0000 3 6 2.0846 1.3052 0.0000 4 6 2.3090 1.7645 1.4421 5 6 2.0660 -1.2726 -0.0006 6 8 1.4617 -2.3239 -0.0983 7 7 3.4095 -1.2750 0.1072 8 6 4.0797 -0.1040 0.3346 9 1 3.8047 0.5220 1.1706 10 6 5.1150 0.2800 -0.5108 11 7 5.1909 -0.2172 -1.7242 12 14 6.3977 1.5031 0.0792 13 1 7.3857 1.7449 -1.0027 14 1 5.7339 2.7823 0.4378 15 1 7.0928 0.9549 1.2716 16 6 4.1522 -2.5314 -0.0191 17 6 3.6072 -3.7522 0.7251 18 6 4.8741 -3.0535 1.2248 19 1 -0.5401 0.9352 0.0004 20 1 -0.5399 -0.9354 -0.0004 21 1 3.0477 1.1688 -0.4919 22 1 1.5066 2.0584 -0.5355 23 1 1.3942 2.2156 1.8263 24 1 2.5781 0.9069 2.0588 25 1 3.1149 2.4981 1.4685 26 1 4.5008 -0.8181 -2.0461 27 1 4.6272 -2.7017 -0.9853 28 1 2.6958 -3.6205 1.3083 29 1 3.7239 -4.7255 0.2485 30 1 5.8238 -3.5675 1.0768 31 1 4.7968 -2.4619 2.1370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346229055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:31 Heat of formation + Delta-G solvation = 26.053792 kcal Electronic energy + Delta-G solvation = -14511.532994 eV Core-core repulsion = 12181.254140 eV Total energy + Delta-G solvation = -2330.278853 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.25172 -36.03527 -35.09509 -33.21085 -30.87984 -29.46073 -24.54945 -23.65558 -22.18322 -21.58360 -19.95431 -18.74418 -16.85369 -15.46691 -15.22544 -14.81714 -14.01871 -13.80900 -13.43309 -12.95892 -12.86101 -12.14901 -11.78973 -11.60530 -11.28672 -10.97335 -10.75084 -10.43613 -10.34050 -10.12300 -9.93713 -9.73333 -9.24375 -8.80716 -8.52665 -8.31717 -7.66138 -6.58704 -4.14130 2.35551 3.23771 3.28762 3.45589 4.13592 4.39520 4.53931 4.70555 4.99756 5.71386 5.74433 5.75010 5.79769 5.97220 6.08065 6.27267 6.31958 6.36253 6.38668 6.51528 6.73599 6.86380 6.91021 6.95818 7.13463 7.26724 7.65272 7.79558 8.04053 8.37165 8.97948 9.41407 9.81147 10.56280 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.018055 C = 0.011945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.111593 B = 1550.440378 C = 2343.578498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.113 4.113 3 C -0.112 4.112 4 C -0.130 4.130 5 C 0.509 3.491 6 O -0.598 6.598 7 N -0.424 5.424 8 C -0.429 4.429 9 H 0.101 0.899 10 C 0.017 3.983 11 N -0.862 5.862 12 Si 1.065 2.935 13 H -0.279 1.279 14 H -0.279 1.279 15 H -0.282 1.282 16 C 0.084 3.916 17 C -0.171 4.171 18 C -0.181 4.181 19 H 0.097 0.903 20 H 0.101 0.899 21 H 0.138 0.862 22 H 0.038 0.962 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.278 0.722 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 2.152 4.190 4.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.115 4.115 3 C -0.148 4.148 4 C -0.187 4.187 5 C 0.301 3.699 6 O -0.485 6.485 7 N -0.143 5.143 8 C -0.556 4.556 9 H 0.118 0.882 10 C -0.194 4.194 11 N -0.493 5.493 12 Si 0.890 3.110 13 H -0.204 1.204 14 H -0.205 1.205 15 H -0.208 1.208 16 C -0.020 4.020 17 C -0.208 4.208 18 C -0.218 4.218 19 H 0.115 0.885 20 H 0.119 0.881 21 H 0.156 0.844 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.160 2.404 3.671 4.391 hybrid contribution -1.355 -0.764 0.407 1.608 sum -1.195 1.640 4.077 4.554 Atomic orbital electron populations 1.24193 0.94955 1.01302 1.00638 1.21717 0.94584 0.95497 0.99736 1.21382 1.04308 0.91406 0.97725 1.21716 0.99456 1.00435 0.97052 1.18721 0.83183 0.88565 0.79419 1.90612 1.69133 1.33275 1.55459 1.42768 1.03498 1.05236 1.62796 1.20721 1.19654 0.99811 1.15461 0.88159 1.26502 0.99348 1.00595 0.92920 1.70677 1.36376 1.27727 1.14514 0.83563 0.75988 0.75349 0.76056 1.20430 1.20497 1.20779 1.21521 0.99095 0.86213 0.95219 1.23059 0.97544 0.95853 1.04383 1.23077 0.95588 1.03741 0.99439 0.88459 0.88077 0.84430 0.94301 0.94790 0.92147 0.92954 0.91116 0.88332 0.88444 0.89749 0.89554 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 13.92 28.95 0.40 -2.92 16 2 C -0.11 -2.48 5.11 -102.87 -0.53 -3.01 16 3 C -0.11 -2.29 5.24 -27.88 -0.15 -2.44 16 4 C -0.13 -2.36 8.30 37.16 0.31 -2.05 16 5 C 0.51 12.85 7.44 -12.73 -0.09 12.75 16 6 O -0.60 -16.08 14.24 5.23 0.07 -16.01 16 7 N -0.42 -10.53 2.30 -109.10 -0.25 -10.78 16 8 C -0.43 -10.41 5.41 -15.02 -0.08 -10.49 16 9 H 0.10 2.34 3.48 -52.49 -0.18 2.16 16 10 C 0.02 0.43 4.33 -17.45 -0.08 0.35 16 11 N -0.86 -23.05 13.25 55.50 0.74 -22.32 16 12 Si 1.06 21.82 29.97 -169.99 -5.09 16.73 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 15 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 16 C 0.08 1.97 5.09 -67.92 -0.35 1.62 16 17 C -0.17 -3.56 9.20 -26.69 -0.25 -3.80 16 18 C -0.18 -3.64 10.36 -26.69 -0.28 -3.91 16 19 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 20 H 0.10 2.00 7.50 -52.49 -0.39 1.61 16 21 H 0.14 3.21 4.24 -51.93 -0.22 2.99 16 22 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.18 6.50 -51.93 -0.34 0.84 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.28 7.73 7.22 -40.82 -0.29 7.43 16 27 H 0.10 2.41 7.40 -51.93 -0.38 2.03 16 28 H 0.10 2.19 7.01 -51.93 -0.36 1.83 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 255.68 15.07 3.85 3.85 Total: -1.00 -27.70 255.68 -5.69 -33.39 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.93 Total: 9.03 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.08 Total: -13.89 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.48 Total: -33.10 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.07 Total: -16.01 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.09 Total: 16.73 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.70 -5.69 -33.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346229055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.442 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds