Wall clock time and date at job start Sun Mar 29 2020 21:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33121 * 1 3 3 C 1.50708 * 119.99478 * 2 1 4 4 C 1.52996 * 109.46794 * 88.60000 * 3 2 1 5 5 C 1.46951 * 120.00303 * 180.02562 * 2 1 3 6 6 O 1.21656 * 120.00000 * 5.29645 * 5 2 1 7 7 N 1.34781 * 119.99577 * 185.29951 * 5 2 1 8 8 C 1.36818 * 120.00332 * 5.72401 * 7 5 2 9 9 H 1.08002 * 119.99825 * 53.80247 * 8 7 5 10 10 C 1.39072 * 119.99745 * 233.80149 * 8 7 5 11 11 N 1.31349 * 120.00270 * 21.21294 * 10 8 7 12 12 Si 1.86806 * 119.99753 * 201.20576 * 10 8 7 13 13 H 1.48497 * 109.46839 * 180.02562 * 12 10 8 14 14 H 1.48504 * 109.46978 * 300.00549 * 12 10 8 15 15 H 1.48507 * 109.46842 * 60.00266 * 12 10 8 16 16 C 1.46498 * 119.99705 * 185.72866 * 7 5 2 17 17 C 1.53012 * 117.49745 * 315.25390 * 16 7 5 18 18 C 1.53005 * 117.49787 * 246.60073 * 16 7 5 19 19 H 1.07995 * 120.00704 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.99547 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46680 * 208.59824 * 3 2 1 22 22 H 1.09003 * 109.46981 * 328.59930 * 3 2 1 23 23 H 1.08998 * 109.47397 * 281.17145 * 4 3 2 24 24 H 1.09000 * 109.47271 * 41.17768 * 4 3 2 25 25 H 1.09004 * 109.46689 * 161.16988 * 4 3 2 26 26 H 0.96999 * 119.99711 * 3.03122 * 11 10 8 27 27 H 1.08999 * 115.55713 * 100.92394 * 16 7 5 28 28 H 1.09001 * 117.49651 * 0.02562 * 17 16 7 29 29 H 1.09000 * 117.49373 * 145.01923 * 17 16 7 30 30 H 1.08999 * 117.49361 * 214.97791 * 18 16 7 31 31 H 1.09001 * 117.49939 * 359.97026 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3312 0.0000 0.0000 3 6 2.0846 1.3052 0.0000 4 6 2.3090 1.7645 1.4421 5 6 2.0660 -1.2726 -0.0006 6 8 1.4617 -2.3239 -0.0983 7 7 3.4095 -1.2750 0.1072 8 6 4.0797 -0.1040 0.3346 9 1 3.8047 0.5220 1.1706 10 6 5.1150 0.2800 -0.5108 11 7 5.1909 -0.2172 -1.7242 12 14 6.3977 1.5031 0.0792 13 1 7.3857 1.7449 -1.0027 14 1 5.7339 2.7823 0.4378 15 1 7.0928 0.9549 1.2716 16 6 4.1522 -2.5314 -0.0191 17 6 3.6072 -3.7522 0.7251 18 6 4.8741 -3.0535 1.2248 19 1 -0.5401 0.9352 0.0004 20 1 -0.5399 -0.9354 -0.0004 21 1 3.0477 1.1688 -0.4919 22 1 1.5066 2.0584 -0.5355 23 1 1.3942 2.2156 1.8263 24 1 2.5781 0.9069 2.0588 25 1 3.1149 2.4981 1.4685 26 1 4.5008 -0.8181 -2.0461 27 1 4.6272 -2.7017 -0.9853 28 1 2.6958 -3.6205 1.3083 29 1 3.7239 -4.7255 0.2485 30 1 5.8238 -3.5675 1.0768 31 1 4.7968 -2.4619 2.1370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346229055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:31 Heat of formation + Delta-G solvation = 10.691820 kcal Electronic energy + Delta-G solvation = -14512.199139 eV Core-core repulsion = 12181.254140 eV Total energy + Delta-G solvation = -2330.944999 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.08827 -37.81270 -36.88649 -34.95635 -32.76495 -31.03882 -26.43364 -25.34022 -23.80934 -23.25607 -21.74760 -20.56878 -18.62180 -17.28927 -16.99082 -16.62914 -15.73904 -15.50432 -15.11453 -14.69589 -14.51424 -13.82410 -13.44814 -13.32205 -12.86776 -12.56779 -12.39278 -12.06599 -11.93146 -11.79635 -11.59274 -11.46466 -10.99297 -10.63323 -10.26842 -10.09912 -9.57693 -8.51093 -6.06434 0.67192 1.61425 1.66733 1.85708 2.42389 2.56569 2.79923 2.96805 3.15968 3.96765 4.04876 4.14040 4.17808 4.33352 4.55706 4.69945 4.74918 4.81106 4.84598 4.93768 5.11241 5.22633 5.26541 5.38165 5.55254 5.64571 5.87830 6.02596 6.14574 6.40599 7.10386 7.52316 7.91722 8.60983 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.018055 C = 0.011945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.111593 B = 1550.440378 C = 2343.578498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.151 4.151 3 C -0.106 4.106 4 C -0.124 4.124 5 C 0.490 3.510 6 O -0.629 6.629 7 N -0.431 5.431 8 C -0.424 4.424 9 H 0.113 0.887 10 C -0.018 4.018 11 N -0.893 5.893 12 Si 1.106 2.894 13 H -0.291 1.291 14 H -0.252 1.252 15 H -0.269 1.269 16 C 0.045 3.955 17 C -0.157 4.157 18 C -0.155 4.155 19 H 0.138 0.862 20 H 0.092 0.908 21 H 0.106 0.894 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.257 0.743 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 3.511 5.555 6.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 C -0.142 4.142 4 C -0.181 4.181 5 C 0.283 3.717 6 O -0.518 6.518 7 N -0.149 5.149 8 C -0.551 4.551 9 H 0.130 0.870 10 C -0.223 4.223 11 N -0.525 5.525 12 Si 0.926 3.074 13 H -0.217 1.217 14 H -0.176 1.176 15 H -0.194 1.194 16 C -0.059 4.059 17 C -0.195 4.195 18 C -0.193 4.193 19 H 0.156 0.844 20 H 0.111 0.889 21 H 0.124 0.876 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.053 3.770 5.058 6.309 hybrid contribution -1.423 -1.229 -0.031 1.880 sum -1.476 2.541 5.028 5.823 Atomic orbital electron populations 1.24485 0.93967 1.02816 0.96385 1.21802 0.95591 0.94773 1.03154 1.21228 1.02753 0.91190 0.99078 1.21650 1.01237 0.99952 0.95211 1.19430 0.83635 0.89624 0.78992 1.90565 1.69671 1.34550 1.57041 1.42963 1.03684 1.05963 1.62319 1.20992 1.18964 0.99871 1.15269 0.87029 1.27728 1.00959 1.01353 0.92227 1.70813 1.36326 1.29281 1.16107 0.83063 0.73937 0.74800 0.75593 1.21724 1.17635 1.19448 1.21575 1.01344 0.87113 0.95887 1.23007 0.97210 0.95879 1.03362 1.23130 0.96376 1.02380 0.97379 0.84377 0.88936 0.87627 0.92133 0.92068 0.94054 0.91859 0.93360 0.90353 0.90271 0.87491 0.86825 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 13.92 66.67 0.93 -4.07 16 2 C -0.15 -6.49 5.11 -18.73 -0.10 -6.59 16 3 C -0.11 -4.14 5.24 29.85 0.16 -3.99 16 4 C -0.12 -4.15 8.30 71.98 0.60 -3.55 16 5 C 0.49 25.07 7.44 86.52 0.64 25.72 16 6 O -0.63 -34.54 14.24 -4.21 -0.06 -34.60 16 7 N -0.43 -21.77 2.30 -617.32 -1.42 -23.19 16 8 C -0.42 -20.53 5.41 84.12 0.45 -20.07 16 9 H 0.11 5.09 3.48 -2.91 -0.01 5.08 16 10 C -0.02 -0.90 4.33 84.97 0.37 -0.53 16 11 N -0.89 -48.95 13.25 21.68 0.29 -48.66 16 12 Si 1.11 42.90 29.97 68.60 2.06 44.96 16 13 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 15 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 16 C 0.05 2.16 5.09 45.00 0.23 2.39 16 17 C -0.16 -6.51 9.20 30.62 0.28 -6.23 16 18 C -0.15 -6.08 10.36 30.62 0.32 -5.77 16 19 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 20 H 0.09 3.52 7.50 -2.91 -0.02 3.50 16 21 H 0.11 4.87 4.24 -2.38 -0.01 4.86 16 22 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.53 6.50 -2.39 -0.02 1.52 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.26 14.95 7.22 -92.71 -0.67 14.28 16 27 H 0.08 4.01 7.40 -2.39 -0.02 3.99 16 28 H 0.08 3.59 7.01 -2.39 -0.02 3.57 16 29 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 31 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -60.83 255.68 5.96 -54.87 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 1.22 Total: 29.30 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 3.88 Total: -22.67 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.13 Total: -71.85 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.06 Total: -34.60 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.06 Total: 44.96 kcal Total: -60.83 5.96 -54.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346229055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.560 kcal (2) G-P(sol) polarization free energy of solvation -60.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds